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Getting 'Biological Unit' information from database.
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1FQ3
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GRANZYME B
Authors
:
E. Estebanez-Perpina, P. Fuentes-Prior, D. Belorgey, H. Rubin, W. Bod
Date
:
03 Sep 00 (Deposition) - 31 Jan 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Chymotrypsin-Like Serine Proteinase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Estebanez-Perpina, P. Fuentes-Prior, D. Belorgey, M. Braun, R. Kiefersauer, K. Maskos, R. Huber, H. Rubin, W. Bode
Crystal Structure Of The Caspase Activator Human Granzyme B A Proteinase Highly Specific For An Asp-P1 Residue.
Biol. Chem. V. 381 1203 2000
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:34 , ASN A:65 , PHE A:82 , NAG A:601 , TRP B:36 , SER B:63 , NDG B:700 , NAG B:701
BINDING SITE FOR RESIDUE NDG A 600
2
AC2
SOFTWARE
NDG A:600 , BMA A:602 , TRP B:36 , NDG B:700 , NAG B:701
BINDING SITE FOR RESIDUE NAG A 601
3
AC3
SOFTWARE
NAG A:601
BINDING SITE FOR RESIDUE BMA A 602
4
AC4
SOFTWARE
NDG A:600 , NAG A:601 , MET B:34 , SER B:63 , ASN B:65 , PHE B:82 , NAG B:701
BINDING SITE FOR RESIDUE NDG B 700
5
AC5
SOFTWARE
GLU A:109 , ARG A:110 , NDG A:600 , NAG A:601 , NDG B:700 , BMA B:702
BINDING SITE FOR RESIDUE NAG B 701
6
AC6
SOFTWARE
NAG B:701
BINDING SITE FOR RESIDUE BMA B 702
7
AC7
SOFTWARE
HIS A:57 , LYS A:192 , GLY A:193 , SER A:195
BINDING SITE FOR RESIDUE SO4 A 800
8
AC8
SOFTWARE
LYS B:192 , SER B:195
BINDING SITE FOR RESIDUE SO4 B 900
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018371 (Q48Q, chain A/B, )
2: VAR_047409 (P88A, chain A/B, )
3: VAR_018381 (Y245H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018371
R
55
Q
GRAB_HUMAN
Polymorphism
8192917
A/B
Q
48
Q
2
UniProt
VAR_047409
P
94
A
GRAB_HUMAN
Polymorphism
11539752
A/B
P
88
A
3
UniProt
VAR_018381
Y
247
H
GRAB_HUMAN
Polymorphism
2236338
A/B
Y
245
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243,B:16-243)
2: TRYPSIN_HIS (A:53-58,B:53-58)
3: TRYPSIN_SER (A:189-200,B:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
GRAB_HUMAN
21-245
2
A:16-243
B:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
GRAB_HUMAN
60-65
2
A:53-58
B:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
GRAB_HUMAN
197-208
2
A:189-200
B:189-200
[
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Exons
(4, 8)
Info
All Exons
Exon 1.3b (A:16-61 | B:16-61)
Exon 1.5 (A:61-107 (gaps) | B:61-107 (gaps))
Exon 1.6b (A:108-192 (gaps) | B:108-192 (gaps...)
Exon 1.7d (A:193-245 (gaps) | B:193-245 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.3b
2: Boundary 1.3b/1.5
3: Boundary 1.5/1.6b
4: Boundary 1.6b/1.7d
5: Boundary 1.7d/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000216341
1a
ENSE00001267008
chr14:
25103473-25103312
162
GRAB_HUMAN
1-19
19
0
-
-
1.3b
ENST00000216341
3b
ENSE00000654543
chr14:
25102268-25102121
148
GRAB_HUMAN
19-68
50
2
A:16-61
B:16-61
48
48
1.5
ENST00000216341
5
ENSE00001762893
chr14:
25101665-25101530
136
GRAB_HUMAN
68-113
46
2
A:61-107 (gaps)
B:61-107 (gaps)
47
47
1.6b
ENST00000216341
6b
ENSE00000654540
chr14:
25101324-25101064
261
GRAB_HUMAN
114-200
87
2
A:108-192 (gaps)
B:108-192 (gaps)
88
88
1.7d
ENST00000216341
7d
ENSE00001929764
chr14:
25100420-25100161
260
GRAB_HUMAN
201-247
47
2
A:193-245 (gaps)
B:193-245 (gaps)
54
54
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1fq3a_ (A:)
1b: SCOP_d1fq3b_ (B:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Granzyme B
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1fq3a_
A:
1b
d1fq3b_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1fq3A01 (A:16-27,A:121-232)
1b: CATH_1fq3B01 (B:16-27,B:121-232)
1c: CATH_1fq3A02 (A:28-120,A:233-244)
1d: CATH_1fq3B02 (B:28-120,B:233-244)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1fq3A01
A:16-27,A:121-232
1b
1fq3B01
B:16-27,B:121-232
1c
1fq3A02
A:28-120,A:233-244
1d
1fq3B02
B:28-120,B:233-244
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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