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1FQ1
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF KINASE ASSOCIATED PHOSPHATASE (KAP) IN COMPLEX WITH PHOSPHO-CDK2
Authors
:
H. Song, N. Hanlon, N. R. Brown, M. E. M. Noble, L. N. Johnson, D. Barford
Date
:
01 Sep 00 (Deposition) - 09 May 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Phospho-Protein/Protein Complex, Hydrolase/Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Song, N. Hanlon, N. R. Brown, M. E. Noble, L. N. Johnson, D. Barford
Phosphoprotein-Protein Interactions Revealed By The Crystal Structure Of Kinase-Associated Phosphatase In Complex With Phosphocdk2.
Mol. Cell V. 7 615 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: MAGNESIUM ION (MGa)
3a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:132 , ASP B:145 , ATP B:381
BINDING SITE FOR RESIDUE MG B 383
2
AC2
SOFTWARE
ILE B:10 , GLY B:13 , THR B:14 , VAL B:18 , ALA B:31 , LYS B:33 , GLU B:81 , PHE B:82 , LEU B:83 , ASP B:86 , LYS B:89 , ASP B:127 , LYS B:129 , GLN B:131 , ASN B:132 , ASP B:145 , MG B:383
BINDING SITE FOR RESIDUE ATP B 381
[
close Site info
]
SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016157 (Y15S, chain B, )
02: VAR_053927 (V18L, chain B, )
03: VAR_013842 (W31R, chain A, )
04: VAR_041972 (P45L, chain B, )
05: VAR_013843 (F78L, chain A, )
06: VAR_013844 (C79Y, chain A, )
07: VAR_013845 (N91K, chain A, )
08: VAR_013846 (D94V, chain A, )
09: VAR_013847 (L95F, chain A, )
10: VAR_013848 (I108V, chain A, )
11: VAR_051769 (S159F, chain A, )
12: VAR_013849 (N187S, chain A, )
13: VAR_013850 (K195I, chain A, )
14: VAR_019988 (T290S, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016157
Y
15
S
CDK2_HUMAN
Polymorphism
3087335
B
Y
15
S
02
UniProt
VAR_053927
V
18
L
CDK2_HUMAN
Polymorphism
11554376
B
V
18
L
03
UniProt
VAR_013842
W
31
R
CDKN3_HUMAN
Disease (HCC)
---
A
W
31
R
04
UniProt
VAR_041972
P
45
L
CDK2_HUMAN
Unclassified
---
B
P
45
L
05
UniProt
VAR_013843
F
78
L
CDKN3_HUMAN
Disease (HCC)
---
A
F
78
L
06
UniProt
VAR_013844
C
79
Y
CDKN3_HUMAN
Disease (HCC)
---
A
C
79
Y
07
UniProt
VAR_013845
N
91
K
CDKN3_HUMAN
Disease (HCC)
---
A
N
91
K
08
UniProt
VAR_013846
D
94
V
CDKN3_HUMAN
Disease (HCC)
---
A
D
94
V
09
UniProt
VAR_013847
L
95
F
CDKN3_HUMAN
Disease (HCC)
---
A
L
95
F
10
UniProt
VAR_013848
I
108
V
CDKN3_HUMAN
Disease (HCC)
144479038
A
I
108
V
11
UniProt
VAR_051769
S
159
F
CDKN3_HUMAN
Polymorphism
1803843
A
S
159
F
12
UniProt
VAR_013849
N
187
S
CDKN3_HUMAN
Disease (HCC)
---
A
N
187
S
13
UniProt
VAR_013850
K
195
I
CDKN3_HUMAN
Disease (HCC)
---
A
K
195
I
14
UniProt
VAR_019988
T
290
S
CDK2_HUMAN
Polymorphism
2069413
B
T
290
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (B:10-33)
2: PROTEIN_KINASE_ST (B:123-135)
3: TYR_PHOSPHATASE_2 (A:135-187)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK2_HUMAN
10-33
1
B:10-33
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK2_HUMAN
123-135
1
B:123-135
3
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
CDKN3_HUMAN
135-187
1
A:135-187
[
close PROSITE info
]
Exons
(14, 14)
Info
All Exons
Exon 1.1 (B:1-39)
Exon 1.2 (B:39-65)
Exon 1.3 (B:65-105)
Exon 1.4 (B:106-162)
Exon 1.5 (B:163-196)
Exon 1.6 (B:197-264)
Exon 1.7 (B:265-296)
Exon 2.2c (A:21-31)
Exon 2.3a (A:31-50)
Exon 2.5 (A:50-65)
Exon 2.6 (A:65-139)
Exon 2.8 (A:139-150)
Exon 2.9 (A:150-184)
Exon 2.10c (A:185-203)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/-
09: Boundary 2.1/2.2c
10: Boundary 2.2c/2.3a
11: Boundary 2.3a/2.5
12: Boundary 2.5/2.6
13: Boundary 2.6/2.8
14: Boundary 2.8/2.9
15: Boundary 2.9/2.10c
16: Boundary 2.10c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000266970
1
ENSE00001301614
chr12:
56360556-56360908
353
CDK2_HUMAN
1-39
39
1
B:1-39
39
1.2
ENST00000266970
2
ENSE00000838625
chr12:
56361641-56361718
78
CDK2_HUMAN
39-65
27
1
B:39-65
27
1.3
ENST00000266970
3
ENSE00000838626
chr12:
56361833-56361953
121
CDK2_HUMAN
65-105
41
1
B:65-105
41
1.4
ENST00000266970
4
ENSE00000838629
chr12:
56362562-56362732
171
CDK2_HUMAN
106-162
57
1
B:106-162
57
1.5
ENST00000266970
5
ENSE00001704611
chr12:
56363259-56363360
102
CDK2_HUMAN
163-196
34
1
B:163-196
34
1.6
ENST00000266970
6
ENSE00000938649
chr12:
56364828-56365031
204
CDK2_HUMAN
197-264
68
1
B:197-264
68
1.7
ENST00000266970
7
ENSE00001215687
chr12:
56365305-56366565
1261
CDK2_HUMAN
265-298
34
1
B:265-296
32
2.1
ENST00000335183
1
ENSE00001418528
chr14:
54863673-54863795
123
CDKN3_HUMAN
1-3
3
0
-
-
2.2c
ENST00000335183
2c
ENSE00001233458
chr14:
54866612-54866694
83
CDKN3_HUMAN
4-31
28
1
A:21-31
11
2.3a
ENST00000335183
3a
ENSE00000657539
chr14:
54868242-54868297
56
CDKN3_HUMAN
31-50
20
1
A:31-50
20
2.5
ENST00000335183
5
ENSE00001415342
chr14:
54875463-54875507
45
CDKN3_HUMAN
50-65
16
1
A:50-65
16
2.6
ENST00000335183
6
ENSE00000854777
chr14:
54878202-54878424
223
CDKN3_HUMAN
65-139
75
1
A:65-139
75
2.8
ENST00000335183
8
ENSE00001002759
chr14:
54882617-54882648
32
CDKN3_HUMAN
139-150
12
1
A:139-150
12
2.9
ENST00000335183
9
ENSE00000854778
chr14:
54884566-54884669
104
CDKN3_HUMAN
150-184
35
1
A:150-184
35
2.10c
ENST00000335183
10c
ENSE00001917135
chr14:
54886710-54886936
227
CDKN3_HUMAN
185-212
28
1
A:185-203
19
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1fq1b_ (B:)
2a: SCOP_d1fq1a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Human (Homo sapiens) [TaxId: 9606]
(336)
1a
d1fq1b_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Dual specificity phosphatase-like
(27)
Protein domain
:
Kinase associated phosphatase (kap)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1fq1a_
A:
[
close SCOP info
]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1fq1B01 (B:1-84)
2a: CATH_1fq1A00 (A:21-203)
3a: CATH_1fq1B02 (B:85-295)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1fq1B01
B:1-84
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
2a
1fq1A00
A:21-203
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
1fq1B02
B:85-295
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Asymmetric Unit 1
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