PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1FPF
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (256 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURAL ASPECTS OF THE ALLOSTERIC INHIBITION OF FRUCTOSE-1,6-BISPHOSPHATASE BY AMP: THE BINDING OF BOTH THE SUBSTRATE ANALOGUE 2, 5-ANHYDRO-D-GLUCITOL-1,6-BISPHOSPHATE AND CATALYTIC METAL IONS MONITORED BY X-RAY CRYSTALLOGRAPHY
Authors
:
V. Villeret, S. Huang, Y. Zhang, W. N. Lipscomb
Date
:
15 Dec 94 (Deposition) - 27 Feb 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Hydrolase (Phosphoric Monoester)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Villeret, S. Huang, Y. Zhang, W. N. Lipscomb
Structural Aspects Of The Allosteric Inhibition Of Fructose-1, 6-Bisphosphatase By Amp: The Binding Of Both The Substrate Analogue 2, 5-Anhydro-D-Glucitol 1, 6-Bisphosphate And Catalytic Metal Ions Monitored By X-Ray Crystallography
Biochemistry V. 34 4307 1995
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 8)
Info
All Hetero Components
1a: 2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHAT... (AHGa)
1b: 2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHAT... (AHGb)
2a: ADENOSINE MONOPHOSPHATE (AMPa)
2b: ADENOSINE MONOPHOSPHATE (AMPb)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AHG
2
Ligand/Ion
2,5-ANHYDROGLUCITOL-1,6-BIPHOSPHATE
2
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
3
MN
4
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (AUTHOR)
02: AC2 (AUTHOR)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AM1 (AUTHOR)
12: AM2 (AUTHOR)
13: MA1 (AUTHOR)
14: MA2 (AUTHOR)
15: MA3 (AUTHOR)
16: MA4 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
AUTHOR
ARG B:243 , TYR A:244 , ASN A:212 , TYR A:215 , TYR A:264 , LYS A:274 , MET A:248 , ARG A:276 , GLU A:280 , GLY A:122 , ASP A:121
ACTIVE SITE IN MONOMER COMPOSED OF CHAIN A
02
AC2
AUTHOR
ARG A:243 , TYR B:244 , ASN B:212 , TYR B:215 , TYR B:264 , LYS B:274 , MET B:248 , ARG B:276 , GLU B:280 , GLY B:122 , ASP B:121
ACTIVE SITE IN MONOMER COMPOSED OF CHAIN B
03
AC3
SOFTWARE
GLU A:97 , ASP A:118 , ASP A:121 , ARG A:276 , GLU A:280 , AHG A:338
BINDING SITE FOR RESIDUE MN A 336
04
AC4
SOFTWARE
GLU A:97 , GLU A:98 , ASP A:118 , LEU A:120
BINDING SITE FOR RESIDUE MN A 337
05
AC5
SOFTWARE
GLU B:97 , ASP B:118 , ASP B:121 , GLU B:280 , AHG B:338 , HOH B:402
BINDING SITE FOR RESIDUE MN B 336
06
AC6
SOFTWARE
GLU B:97 , GLU B:98 , ASP B:118 , LEU B:120 , HOH B:387
BINDING SITE FOR RESIDUE MN B 337
07
AC7
SOFTWARE
ASP A:121 , GLY A:122 , ASN A:212 , TYR A:215 , TYR A:244 , GLY A:246 , SER A:247 , MET A:248 , TYR A:264 , LYS A:274 , ARG A:276 , MN A:336 , HOH A:357 , HOH A:368 , HOH A:375 , ARG B:243
BINDING SITE FOR RESIDUE AHG A 338
08
AC8
SOFTWARE
VAL A:17 , GLN A:20 , GLY A:21 , GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , MET A:30 , THR A:31 , LYS A:112 , TYR A:113 , HOH A:359 , HOH A:363
BINDING SITE FOR RESIDUE AMP A 339
09
AC9
SOFTWARE
ARG A:243 , GLU B:97 , ASP B:121 , GLY B:122 , SER B:123 , ASN B:212 , TYR B:215 , TYR B:244 , GLY B:246 , MET B:248 , TYR B:264 , LYS B:274 , MN B:336 , HOH B:357 , HOH B:372 , HOH B:376 , HOH B:385 , HOH B:402
BINDING SITE FOR RESIDUE AHG B 338
10
AD1
SOFTWARE
VAL B:17 , GLN B:20 , GLY B:21 , GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , MET B:30 , THR B:31 , LYS B:112 , TYR B:113 , ARG B:140 , MET B:177 , HOH B:355
BINDING SITE FOR RESIDUE AMP B 339
11
AM1
AUTHOR
GLN A:20 , VAL A:17 , THR A:31 , ARG A:140 , TYR A:113 , GLU A:29 , MET A:30 , THR A:27 , LYS A:112 , MET A:177 , ALA A:24 , GLY A:21 , GLY A:26
AMP BINDING SITE IN MONOMER COMPOSED OF CHAIN A
12
AM2
AUTHOR
GLN B:20 , VAL B:17 , THR B:31 , ARG B:140 , TYR B:113 , GLU B:29 , MET B:30 , THR B:27 , LYS B:112 , MET B:177 , ALA B:24 , GLY B:21 , GLY B:26
AMP BINDING SITE IN MONOMER COMPOSED OF CHAIN B
13
MA1
AUTHOR
GLU A:97 , ASP A:118 , GLU A:280 , ASP A:121
FIRST METAL SITE IN MONOMER COMPOSED OF CHAIN A
14
MA2
AUTHOR
GLU B:97 , ASP B:118 , GLU B:280 , ASP B:121
FIRST METAL SITE IN MONOMER COMPOSED OF CHAIN B
15
MA3
AUTHOR
GLU A:97 , ASP A:118 , LEU A:120 , GLU A:98
SECOND METAL SITE IN MONOMER COMPOSED OF CHAIN A
16
MA4
AUTHOR
GLU B:97 , ASP B:118 , LEU B:120 , GLU B:98
SECOND METAL SITE IN MONOMERS COMPOSED OF CHAIN B
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FBPASE (A:273-285,B:273-285)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBPASE
PS00124
Fructose-1-6-bisphosphatase active site.
F16P1_PIG
274-286
2
A:273-285
B:273-285
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1fpfa_ (A:)
1b: SCOP_d1fpfb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
Fructose-1,6-bisphosphatase
(75)
Pig (Sus scrofa) [TaxId: 9823]
(65)
1a
d1fpfa_
A:
1b
d1fpfb_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1fpfA01 (A:9-199)
1b: CATH_1fpfB01 (B:9-199)
2a: CATH_1fpfA02 (A:200-334)
2b: CATH_1fpfB02 (B:200-334)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Pig (Sus scrofa)
(54)
1a
1fpfA01
A:9-199
1b
1fpfB01
B:9-199
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Pig (Sus scrofa)
(54)
2a
1fpfA02
A:200-334
2b
1fpfB02
B:200-334
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (135 KB)
Header - Asym.Unit
Biol.Unit 1 (256 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1FPF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help