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Asym. Unit
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Asym.Unit (26 KB)
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(1)
Title
:
SOLUTION STRUCTURE OF THE PHD DOMAIN FROM THE KAP-1 COREPRESSOR
Authors
:
A. D. Capili, D. C. Schultz, F. J. Rauscher Iii, K. L. B. Borden
Date
:
29 Aug 00 (Deposition) - 24 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Phd Domain, C3Hc4 Type Zinc Binding Domain, Nmr-Structure, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Capili, D. C. Schultz, F. J. Rauscheriii, K. L. Borden
Solution Structure Of The Phd Domain From The Kap-1 Corepressor: Structural Determinants For Phd, Ring And Lim Zinc-Binding Domains.
Embo J. V. 20 165 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:40 , GLN A:42 , CYS A:43 , CYS A:66 , CYS A:69
BINDING SITE FOR RESIDUE ZN A 89
2
AC2
SOFTWARE
CYS A:28 , VAL A:30 , CYS A:31 , PHE A:47 , HIS A:48 , CYS A:51
BINDING SITE FOR RESIDUE ZN A 90
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZF_PHD_2 (A:25-72)
2: ZF_PHD_1 (A:28-69)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_PHD_2
PS50016
Zinc finger PHD-type profile.
TIF1B_HUMAN
625-672
1
A:25-72
2
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
TIF1B_HUMAN
628-669
1
A:28-69
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Exons
(3, 3)
Info
All Exons
Exon 1.12 (A:1-16 (gaps))
Exon 1.13 (A:17-61 (gaps))
Exon 1.14 (A:61-88 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.11/1.12
2: Boundary 1.12/1.13
3: Boundary 1.13/1.14
4: Boundary 1.14/1.15
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000253024
1
ENSE00001469551
chr19:
59055836-59056464
629
TIF1B_HUMAN
1-114
114
0
-
-
1.2
ENST00000253024
2
ENSE00000655831
chr19:
59056792-59056904
113
TIF1B_HUMAN
114-151
38
0
-
-
1.3
ENST00000253024
3
ENSE00000655830
chr19:
59057131-59057263
133
TIF1B_HUMAN
152-196
45
0
-
-
1.4
ENST00000253024
4
ENSE00000655828
chr19:
59058743-59058878
136
TIF1B_HUMAN
196-241
46
0
-
-
1.5
ENST00000253024
5
ENSE00000655827
chr19:
59058964-59059080
117
TIF1B_HUMAN
241-280
40
0
-
-
1.6
ENST00000253024
6
ENSE00000655826
chr19:
59059159-59059273
115
TIF1B_HUMAN
280-318
39
0
-
-
1.7
ENST00000253024
7
ENSE00000655825
chr19:
59059401-59059547
147
TIF1B_HUMAN
319-367
49
0
-
-
1.8
ENST00000253024
8
ENSE00000655824
chr19:
59059661-59059775
115
TIF1B_HUMAN
368-406
39
0
-
-
1.9
ENST00000253024
9
ENSE00000655823
chr19:
59059853-59059959
107
TIF1B_HUMAN
406-441
36
0
-
-
1.10
ENST00000253024
10
ENSE00000655822
chr19:
59060107-59060143
37
TIF1B_HUMAN
442-454
13
0
-
-
1.11
ENST00000253024
11
ENSE00000655820
chr19:
59060229-59060277
49
TIF1B_HUMAN
454-470
17
0
-
-
1.12
ENST00000253024
12
ENSE00000655819
chr19:
59060355-59060607
253
TIF1B_HUMAN
470-554
85
1
A:1-16 (gaps)
73
1.13
ENST00000253024
13
ENSE00000655818
chr19:
59060698-59061017
320
TIF1B_HUMAN
555-661
107
1
A:17-61 (gaps)
107
1.14
ENST00000253024
14
ENSE00000655817
chr19:
59061104-59061227
124
TIF1B_HUMAN
661-702
42
1
A:61-88 (gaps)
37
1.15
ENST00000253024
15
ENSE00000655816
chr19:
59061316-59061402
87
TIF1B_HUMAN
703-731
29
0
-
-
1.16
ENST00000253024
16
ENSE00000655815
chr19:
59061514-59061651
138
TIF1B_HUMAN
732-777
46
0
-
-
1.17
ENST00000253024
17
ENSE00001391650
chr19:
59061744-59062082
339
TIF1B_HUMAN
778-835
58
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1fp0a1 (A:19-88)
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Protein Domains
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
PHD domain
(30)
Protein domain
:
Nuclear corepressor KAP-1 (TIF-1beta)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1fp0a1
A:19-88
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1fp0A00 (A:1-88)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Herpes Virus-1
(49)
Homologous Superfamily
:
Zinc/RING finger domain, C3HC4 (zinc finger)
(47)
Human (Homo sapiens)
(26)
1a
1fp0A00
A:1-88
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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