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1FOE
Biol. Unit 7
Info
Asym.Unit (367 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (93 KB)
Biol.Unit 4 (94 KB)
Biol.Unit 5 (356 KB)
Biol.Unit 6 (182 KB)
Biol.Unit 7 (180 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAC1 IN COMPLEX WITH THE GUANINE NUCLEOTIDE EXCHANGE REGION OF TIAM1
Authors
:
D. K. Worthylake, K. L. Rossman, J. Sondek
Date
:
27 Aug 00 (Deposition) - 17 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Biol. Unit 6: A,B,G,H (1x)
Biol. Unit 7: C,D,E,F (1x)
Keywords
:
Dbl Homology Domain, Pleckstrin Homology Domain, Gtpase, Guanine Nucleotide Exchange Factor, Signaling Protein, Immune System/Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. K. Worthylake, K. L. Rossman, J. Sondek
Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1.
Nature V. 408 682 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASP D:11 , GLY D:12 , ALA D:13 , VAL D:14 , GLY D:15 , LYS D:16 , THR D:17
BINDING SITE FOR RESIDUE SO4 D 4002
2
AC3
SOFTWARE
ASP F:11 , GLY F:12 , ALA F:13 , VAL F:14 , GLY F:15 , LYS F:16 , THR F:17
BINDING SITE FOR RESIDUE SO4 F 4003
[
close Site info
]
SAPs(SNPs)/Variants
(10, 20)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_014540 (N26D, chain D/F, )
02: VAR_014541 (F28L, chain D/F, )
03: VAR_014542 (A59T, chain D/F, )
04: VAR_014543 (D63G, chain D/F, )
05: VAR_014545 (V93G, chain D/F, )
06: VAR_014544 (V93I, chain D/F, )
07: VAR_014546 (T108I, chain D/F, )
08: VAR_014547 (K130R, chain D/F, )
09: VAR_014548 (K133E, chain D/F, )
10: VAR_033303 (T135I, chain D/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
D/F
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
D/F
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
D/F
A
59
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
D/F
D
63
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
D/F
V
93
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
D/F
V
93
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
D/F
T
108
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
D/F
K
130
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
D/F
K
133
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
D/F
T
135
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: RHO (D:1-176,F:1-176)
2: DH_2 (C:1040-1234,E:1040-1234)
3: DH_1 (C:1182-1207,E:1182-1207)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_HUMAN
1-176
2
-
D:1-176
F:1-176
-
2
DH_2
PS50010
Dbl homology (DH) domain profile.
TIAM1_MOUSE
1040-1234
2
-
C:1040-1234
E:1040-1234
-
3
DH_1
PS00741
Dbl homology (DH) domain signature.
TIAM1_MOUSE
1182-1207
2
-
C:1182-1207
E:1182-1207
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1foea1 (A:1034-1239)
1b: SCOP_d1foec1 (C:1036-1239)
1c: SCOP_d1foee1 (E:1035-1239)
1d: SCOP_d1foeg1 (G:1035-1239)
2a: SCOP_d1foea2 (A:1240-1401)
2b: SCOP_d1foec2 (C:1240-1401)
2c: SCOP_d1foee2 (E:1240-1401)
2d: SCOP_d1foeg2 (G:1240-1401)
3a: SCOP_d1foeb_ (B:)
3b: SCOP_d1foed_ (D:)
3c: SCOP_d1foef_ (F:)
3d: SCOP_d1foeh_ (H:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DBL homology domain (DH-domain)
(22)
Superfamily
:
DBL homology domain (DH-domain)
(22)
Family
:
DBL homology domain (DH-domain)
(19)
Protein domain
:
GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d1foea1
A:1034-1239
1b
d1foec1
C:1036-1239
1c
d1foee1
E:1035-1239
1d
d1foeg1
G:1035-1239
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
2a
d1foea2
A:1240-1401
2b
d1foec2
C:1240-1401
2c
d1foee2
E:1240-1401
2d
d1foeg2
G:1240-1401
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
3a
d1foeb_
B:
3b
d1foed_
D:
3c
d1foef_
F:
3d
d1foeh_
H:
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1foeB00 (B:1-177)
1b: CATH_1foeH00 (H:1-177)
1c: CATH_1foeD00 (D:1-177)
1d: CATH_1foeF00 (F:1-177)
2a: CATH_1foeE01 (E:1035-1233)
2b: CATH_1foeG01 (G:1035-1233)
2c: CATH_1foeA01 (A:1034-1233)
2d: CATH_1foeC01 (C:1036-1233)
3a: CATH_1foeC02 (C:1235-1395)
3b: CATH_1foeE02 (E:1235-1395)
3c: CATH_1foeG02 (G:1235-1395)
3d: CATH_1foeA02 (A:1235-1401)
View:
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1foeB00
B:1-177
1b
1foeH00
H:1-177
1c
1foeD00
D:1-177
1d
1foeF00
F:1-177
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Dbl Homology Domain; Chain A
(13)
Homologous Superfamily
:
Dbl Homology Domain; Chain A
(13)
House mouse (Mus musculus)
(7)
2a
1foeE01
E:1035-1233
2b
1foeG01
G:1035-1233
2c
1foeA01
A:1034-1233
2d
1foeC01
C:1036-1233
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
House mouse (Mus musculus)
(39)
3a
1foeC02
C:1235-1395
3b
1foeE02
E:1235-1395
3c
1foeG02
G:1235-1395
3d
1foeA02
A:1235-1401
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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