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1FNW
Biol. Unit 2
Info
Asym.Unit (302 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A
Authors
:
C. A. Earhart, G. M. Vath, M. Roggiani, P. M. Schlivert, D. H. Ohlendorf
Date
:
23 Aug 00 (Deposition) - 17 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Exotoxin A, Superantigen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Earhart, G. M. Vath, M. Roggiani, P. M. Schlievert, D. H. Ohlendorf
Structure Of Streptococcal Pyrogenic Exotoxin A Reveals A Novel Metal Cluster.
Protein Sci. V. 9 1847 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1aa: CADMIUM ION (CDaa)
1ab: CADMIUM ION (CDab)
1ac: CADMIUM ION (CDac)
1ad: CADMIUM ION (CDad)
1ae: CADMIUM ION (CDae)
1af: CADMIUM ION (CDaf)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
1p: CADMIUM ION (CDp)
1q: CADMIUM ION (CDq)
1r: CADMIUM ION (CDr)
1s: CADMIUM ION (CDs)
1t: CADMIUM ION (CDt)
1u: CADMIUM ION (CDu)
1v: CADMIUM ION (CDv)
1w: CADMIUM ION (CDw)
1x: CADMIUM ION (CDx)
1y: CADMIUM ION (CDy)
1z: CADMIUM ION (CDz)
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Sites
(16, 16)
Info
All Sites
01: BC8 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC4 (SOFTWARE)
16: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC8
SOFTWARE
CYS E:1290 , CD E:1423
BINDING SITE FOR RESIDUE CD E 1422
02
BC9
SOFTWARE
ASP E:1239 , CD E:1422 , CD E:1425 , CD G:1424
BINDING SITE FOR RESIDUE CD E 1423
03
CC1
SOFTWARE
CYS E:1290 , CD E:1423 , GLU G:1891
BINDING SITE FOR RESIDUE CD G 1424
04
CC2
SOFTWARE
CYS E:1290 , CD E:1423
BINDING SITE FOR RESIDUE CD E 1425
05
CC3
SOFTWARE
CYS F:1590 , CD F:1723
BINDING SITE FOR RESIDUE CD F 1722
06
CC4
SOFTWARE
ASP F:1539 , CD F:1722 , CD F:1724 , CD F:1725
BINDING SITE FOR RESIDUE CD F 1723
07
CC5
SOFTWARE
CYS F:1590 , CD F:1723 , GLU H:2191
BINDING SITE FOR RESIDUE CD F 1724
08
CC6
SOFTWARE
CYS F:1590 , CD F:1723
BINDING SITE FOR RESIDUE CD F 1725
09
CC7
SOFTWARE
CYS G:1890 , CD G:2023
BINDING SITE FOR RESIDUE CD G 2022
10
CC8
SOFTWARE
CD E:2024 , ASP G:1839 , CD G:2022 , CD G:2025
BINDING SITE FOR RESIDUE CD G 2023
11
CC9
SOFTWARE
GLU E:1291 , CYS G:1890 , CD G:2023
BINDING SITE FOR RESIDUE CD E 2024
12
DC1
SOFTWARE
CYS G:1890 , CD G:2023
BINDING SITE FOR RESIDUE CD G 2025
13
DC2
SOFTWARE
CYS H:2190 , CD H:2323
BINDING SITE FOR RESIDUE CD H 2322
14
DC3
SOFTWARE
CD F:2324 , ASP H:2139 , CD H:2322 , CD H:2325
BINDING SITE FOR RESIDUE CD H 2323
15
DC4
SOFTWARE
GLU F:1591 , CYS H:2190 , CD H:2323
BINDING SITE FOR RESIDUE CD F 2324
16
DC5
SOFTWARE
CYS H:2190 , CD H:2323
BINDING SITE FOR RESIDUE CD H 2325
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: STAPH_STREP_TOXIN_1 (E:1300-1309,F:1600-1609,G:1900-190...)
2: STAPH_STREP_TOXIN_2 (E:1337-1360,F:1637-1660,G:1937-196...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STAPH_STREP_TOXIN_1
PS00277
Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.
SPEA_BPT12
130-139
4
-
-
-
-
E:1300-1309
F:1600-1609
G:1900-1909
H:2200-2209
SPEA_STRPY
130-139
4
-
-
-
-
E:1300-1309
F:1600-1609
G:1900-1909
H:2200-2209
2
STAPH_STREP_TOXIN_2
PS00278
Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.
SPEA_BPT12
167-190
4
-
-
-
-
E:1337-1360
F:1637-1660
G:1937-1960
H:2237-2260
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1fnwa1 (A:1-107)
1b: SCOP_d1fnwb1 (B:301-407)
1c: SCOP_d1fnwc1 (C:601-707)
1d: SCOP_d1fnwd1 (D:901-1007)
1e: SCOP_d1fnwe1 (E:1201-1307)
1f: SCOP_d1fnwf1 (F:1501-1607)
1g: SCOP_d1fnwg1 (G:1801-1907)
1h: SCOP_d1fnwh1 (H:2101-2207)
2a: SCOP_d1fnwa2 (A:108-221)
2b: SCOP_d1fnwb2 (B:408-521)
2c: SCOP_d1fnwc2 (C:708-821)
2d: SCOP_d1fnwd2 (D:1008-1121)
2e: SCOP_d1fnwe2 (E:1308-1421)
2f: SCOP_d1fnwf2 (F:1608-1721)
2g: SCOP_d1fnwg2 (G:1908-2021)
2h: SCOP_d1fnwh2 (H:2208-2321)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Superantigen toxins, N-terminal domain
(91)
Protein domain
:
Streptococcal pyrogenic exotoxin A1
(8)
Streptococcus pyogenes [TaxId: 1314]
(8)
1a
d1fnwa1
A:1-107
1b
d1fnwb1
B:301-407
1c
d1fnwc1
C:601-707
1d
d1fnwd1
D:901-1007
1e
d1fnwe1
E:1201-1307
1f
d1fnwf1
F:1501-1607
1g
d1fnwg1
G:1801-1907
1h
d1fnwh1
H:2101-2207
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Superantigen toxins, C-terminal domain
(103)
Family
:
Superantigen toxins, C-terminal domain
(94)
Protein domain
:
Streptococcal pyrogenic exotoxin A1
(8)
Streptococcus pyogenes [TaxId: 1314]
(8)
2a
d1fnwa2
A:108-221
2b
d1fnwb2
B:408-521
2c
d1fnwc2
C:708-821
2d
d1fnwd2
D:1008-1121
2e
d1fnwe2
E:1308-1421
2f
d1fnwf2
F:1608-1721
2g
d1fnwg2
G:1908-2021
2h
d1fnwh2
H:2208-2321
[
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]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1fnwA02 (A:1-26,A:109-220)
1b: CATH_1fnwC02 (C:601-626,C:709-820)
1c: CATH_1fnwD02 (D:901-926,D:1009-1120)
1d: CATH_1fnwE02 (E:1201-1226,E:1309-1420)
1e: CATH_1fnwF02 (F:1501-1526,F:1609-1720)
1f: CATH_1fnwG02 (G:1801-1826,G:1909-2020)
1g: CATH_1fnwH02 (H:2101-2126,H:2209-2320)
1h: CATH_1fnwB02 (B:301-326,B:409-520)
2a: CATH_1fnwA01 (A:27-106)
2b: CATH_1fnwC01 (C:627-706)
2c: CATH_1fnwD01 (D:927-1006)
2d: CATH_1fnwE01 (E:1227-1306)
2e: CATH_1fnwF01 (F:1527-1606)
2f: CATH_1fnwG01 (G:1827-1906)
2g: CATH_1fnwH01 (H:2127-2206)
2h: CATH_1fnwB01 (B:327-406)
View:
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.120, no name defined]
(91)
Streptococcus pyogenes phage t12. Organism_taxid: 35344. Strain: phaget12
(3)
1a
1fnwA02
A:1-26,A:109-220
1b
1fnwC02
C:601-626,C:709-820
1c
1fnwD02
D:901-926,D:1009-1120
1d
1fnwE02
E:1201-1226,E:1309-1420
1e
1fnwF02
F:1501-1526,F:1609-1720
1f
1fnwG02
G:1801-1826,G:1909-2020
1g
1fnwH02
H:2101-2126,H:2209-2320
1h
1fnwB02
B:301-326,B:409-520
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Streptococcus pyogenes phage t12. Organism_taxid: 35344. Strain: phaget12
(3)
2a
1fnwA01
A:27-106
2b
1fnwC01
C:627-706
2c
1fnwD01
D:927-1006
2d
1fnwE01
E:1227-1306
2e
1fnwF01
F:1527-1606
2f
1fnwG01
G:1827-1906
2g
1fnwH01
H:2127-2206
2h
1fnwB01
B:327-406
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (302 KB)
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