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1FNU
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (159 KB)
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(1)
Title
:
STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A
Authors
:
C. A. Earhart, G. M. Vath, M. Roggiani, P. M. Schlievert, D. H. Ohlendorf
Date
:
23 Aug 00 (Deposition) - 17 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Superantigen, Exotoxin A
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Earhart, G. M. Vath, M. Roggiani, P. M. Schlievert, D. H. Ohlendorf
Structure Of Streptococcal Pyrogenic Exotoxin A Reveals A Novel Metal Cluster.
Protein Sci. V. 9 1847 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 15)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
15
Ligand/Ion
CADMIUM ION
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:90 , HOH A:3000 , HOH A:3008 , HOH B:3003
BINDING SITE FOR RESIDUE CD A 222
02
AC2
SOFTWARE
ASP A:39 , HOH A:2128 , HOH A:3007 , HOH A:3008 , HOH A:3010
BINDING SITE FOR RESIDUE CD A 223
03
AC3
SOFTWARE
CYS A:90 , HOH A:3002 , HOH A:3007 , GLU C:691 , HOH C:3001
BINDING SITE FOR RESIDUE CD C 224
04
AC4
SOFTWARE
LYS A:221 , HOH A:2128 , HOH A:3000 , HOH A:3010 , HOH C:3001
BINDING SITE FOR RESIDUE CD A 225
05
AC5
SOFTWARE
HOH A:3018 , CYS B:390 , HOH B:3015 , HOH B:3019
BINDING SITE FOR RESIDUE CD B 522
06
AC6
SOFTWARE
ASP B:339 , HOH B:2112 , HOH B:3015 , HOH B:3016
BINDING SITE FOR RESIDUE CD B 523
07
AC7
SOFTWARE
CYS B:390 , HOH B:2112 , HOH B:3014 , HOH B:3017 , GLU D:991
BINDING SITE FOR RESIDUE CD D 524
08
AC8
SOFTWARE
HOH A:3018 , HOH A:4229 , HOH B:3014 , HOH B:3016
BINDING SITE FOR RESIDUE CD B 525
09
AC9
SOFTWARE
CYS C:690 , HOH C:3004 , HOH C:3005 , HOH C:4062
BINDING SITE FOR RESIDUE CD C 822
10
BC1
SOFTWARE
ASP C:639 , CD C:825 , HOH C:2103 , HOH C:3004 , HOH C:4000
BINDING SITE FOR RESIDUE CD C 823
11
BC2
SOFTWARE
GLU A:91 , CYS C:690 , HOH C:2103 , HOH C:3006 , HOH C:4243
BINDING SITE FOR RESIDUE CD A 824
12
BC3
SOFTWARE
CD C:823 , HOH C:4000 , HOH C:4062
BINDING SITE FOR RESIDUE CD C 825
13
BC4
SOFTWARE
HOH C:3011 , HOH C:3012 , HOH C:5085 , CYS D:990 , HOH D:8000
BINDING SITE FOR RESIDUE CD D 1122
14
BC5
SOFTWARE
HOH C:3011 , ASP D:939 , HOH D:2107 , HOH D:2135 , HOH D:3013 , HOH D:7091
BINDING SITE FOR RESIDUE CD D 1123
15
BC6
SOFTWARE
GLU B:391 , CYS D:990 , HOH D:2107 , HOH D:2135 , HOH D:2156 , HOH D:4092
BINDING SITE FOR RESIDUE CD B 1124
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: STAPH_STREP_TOXIN_1 (A:100-109,B:400-409,C:700-709,D:10...)
2: STAPH_STREP_TOXIN_2 (A:137-160,B:437-460,C:737-760,D:10...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STAPH_STREP_TOXIN_1
PS00277
Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.
SPEA_BPT12
130-139
4
A:100-109
B:400-409
C:700-709
D:1000-1009
SPEA_STRPY
130-139
4
A:100-109
B:400-409
C:700-709
D:1000-1009
2
STAPH_STREP_TOXIN_2
PS00278
Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.
SPEA_BPT12
167-190
4
A:137-160
B:437-460
C:737-760
D:1037-1060
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1fnua1 (A:1-107)
1b: SCOP_d1fnub1 (B:301-407)
1c: SCOP_d1fnuc1 (C:601-707)
1d: SCOP_d1fnud1 (D:901-1007)
2a: SCOP_d1fnua2 (A:108-221)
2b: SCOP_d1fnub2 (B:408-521)
2c: SCOP_d1fnuc2 (C:708-821)
2d: SCOP_d1fnud2 (D:1008-1121)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Superantigen toxins, N-terminal domain
(91)
Protein domain
:
Streptococcal pyrogenic exotoxin A1
(8)
Streptococcus pyogenes [TaxId: 1314]
(8)
1a
d1fnua1
A:1-107
1b
d1fnub1
B:301-407
1c
d1fnuc1
C:601-707
1d
d1fnud1
D:901-1007
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Superantigen toxins, C-terminal domain
(103)
Family
:
Superantigen toxins, C-terminal domain
(94)
Protein domain
:
Streptococcal pyrogenic exotoxin A1
(8)
Streptococcus pyogenes [TaxId: 1314]
(8)
2a
d1fnua2
A:108-221
2b
d1fnub2
B:408-521
2c
d1fnuc2
C:708-821
2d
d1fnud2
D:1008-1121
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1fnuA02 (A:1-26,A:109-220)
1b: CATH_1fnuB02 (B:301-326,B:409-520)
1c: CATH_1fnuC02 (C:601-626,C:709-820)
1d: CATH_1fnuD02 (D:901-926,D:1009-1120)
2a: CATH_1fnuA01 (A:27-106)
2b: CATH_1fnuB01 (B:327-406)
2c: CATH_1fnuC01 (C:627-706)
2d: CATH_1fnuD01 (D:927-1006)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.120, no name defined]
(91)
Streptococcus pyogenes phage t12. Organism_taxid: 35344. Strain: phaget12
(3)
1a
1fnuA02
A:1-26,A:109-220
1b
1fnuB02
B:301-326,B:409-520
1c
1fnuC02
C:601-626,C:709-820
1d
1fnuD02
D:901-926,D:1009-1120
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Streptococcus pyogenes phage t12. Organism_taxid: 35344. Strain: phaget12
(3)
2a
1fnuA01
A:27-106
2b
1fnuB01
B:327-406
2c
1fnuC01
C:627-706
2d
1fnuD01
D:927-1006
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Chain D
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