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1FJ8
Biol. Unit 1
Info
Asym.Unit (246 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (124 KB)
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(1)
Title
:
THE STRUCTURE OF BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I IN COMPLEX WITH CERULENIN, IMPLICATIONS FOR DRUG DESIGN
Authors
:
A. C. Price, K. Choi, R. J. Heath, Z. Li, S. W. White, C. O. Rock
Date
:
07 Aug 00 (Deposition) - 23 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Condensing Enzymes, Fatty Acid Elongation, Cerulenin, Drug Design, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Price, K. H. Choi, R. J. Heath, Z. Li, S. W. White, C. O. Rock
Inhibition Of Beta-Ketoacyl-Acyl Carrier Protein Synthases By Thiolactomycin And Cerulenin. Structure And Mechanism.
J. Biol. Chem. V. 276 6551 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERa)
1b: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERb)
1c: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERc)
1d: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CER
2
Ligand/Ion
(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:106 , GLY A:107 , ALA A:162 , CYS A:163 , MET A:197 , GLU A:200 , PHE A:201 , HIS A:298 , HIS A:333 , PHE A:390 , GLY A:391 , PHE A:392 , GLN B:113 , VAL B:134 , ALA B:137 , MET B:138
BINDING SITE FOR RESIDUE CER A 500
2
AC2
SOFTWARE
GLN A:113 , VAL A:134 , ALA A:137 , MET A:138 , GLY B:106 , GLY B:107 , ALA B:162 , CYS B:163 , MET B:197 , GLU B:200 , PHE B:201 , HIS B:298 , HIS B:333 , PHE B:390 , GLY B:391 , PHE B:392
BINDING SITE FOR RESIDUE CER B 500
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain A/B, )
2: VAR_FABB_ECOLI_002 (S140F, chain A/B, )
3: VAR_FABB_ECOLI_003 (G299S, chain A/B, )
4: VAR_FABB_ECOLI_004 (A329V, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
A/B
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
A/B
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
A/B
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
A/B
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:154-170,B:154-170)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOLI
154-170
2
A:154-170
B:154-170
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1fj8a1 (A:2-253)
1b: SCOP_d1fj8a2 (A:254-404)
1c: SCOP_d1fj8b1 (B:2-253)
1d: SCOP_d1fj8b2 (B:254-404)
1e: SCOP_d1fj8c1 (C:2-253)
1f: SCOP_d1fj8c2 (C:254-404)
1g: SCOP_d1fj8d1 (D:2-253)
1h: SCOP_d1fj8d2 (D:254-404)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Beta-ketoacyl-ACP synthase I
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d1fj8a1
A:2-253
1b
d1fj8a2
A:254-404
1c
d1fj8b1
B:2-253
1d
d1fj8b2
B:254-404
1e
d1fj8c1
C:2-253
1f
d1fj8c2
C:254-404
1g
d1fj8d1
D:2-253
1h
d1fj8d2
D:254-404
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1fj8A02 (A:260-404)
1b: CATH_1fj8A01 (A:6-259)
1c: CATH_1fj8B01 (B:6-259)
1d: CATH_1fj8C01 (C:6-259)
1e: CATH_1fj8D01 (D:6-259)
1f: CATH_1fj8B02 (B:260-404)
1g: CATH_1fj8C02 (C:260-404)
1h: CATH_1fj8D02 (D:260-404)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(23)
1a
1fj8A02
A:260-404
1b
1fj8A01
A:6-259
1c
1fj8B01
B:6-259
1d
1fj8C01
C:6-259
1e
1fj8D01
D:6-259
1f
1fj8B02
B:260-404
1g
1fj8C02
C:260-404
1h
1fj8D02
D:260-404
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (246 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
Header - Biol.Unit 1
Biol.Unit 2 (124 KB)
Header - Biol.Unit 2
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