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1FJ8
Asym. Unit
Info
Asym.Unit (246 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (124 KB)
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(1)
Title
:
THE STRUCTURE OF BETA-KETOACYL-[ACYL CARRIER PROTEIN] SYNTHASE I IN COMPLEX WITH CERULENIN, IMPLICATIONS FOR DRUG DESIGN
Authors
:
A. C. Price, K. Choi, R. J. Heath, Z. Li, S. W. White, C. O. Rock
Date
:
07 Aug 00 (Deposition) - 23 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.27
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Condensing Enzymes, Fatty Acid Elongation, Cerulenin, Drug Design, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Price, K. H. Choi, R. J. Heath, Z. Li, S. W. White, C. O. Rock
Inhibition Of Beta-Ketoacyl-Acyl Carrier Protein Synthases By Thiolactomycin And Cerulenin. Structure And Mechanism.
J. Biol. Chem. V. 276 6551 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERa)
1b: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERb)
1c: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERc)
1d: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRAN... (CERd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CER
4
Ligand/Ion
(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:106 , GLY A:107 , ALA A:162 , CYS A:163 , MET A:197 , GLU A:200 , PHE A:201 , HIS A:298 , HIS A:333 , PHE A:390 , GLY A:391 , PHE A:392 , GLN B:113 , VAL B:134 , ALA B:137 , MET B:138
BINDING SITE FOR RESIDUE CER A 500
2
AC2
SOFTWARE
GLN A:113 , VAL A:134 , ALA A:137 , MET A:138 , GLY B:106 , GLY B:107 , ALA B:162 , CYS B:163 , MET B:197 , GLU B:200 , PHE B:201 , HIS B:298 , HIS B:333 , PHE B:390 , GLY B:391 , PHE B:392
BINDING SITE FOR RESIDUE CER B 500
3
AC3
SOFTWARE
GLY C:106 , GLY C:107 , ALA C:162 , CYS C:163 , MET C:197 , GLU C:200 , PHE C:201 , HIS C:298 , HIS C:333 , PHE C:390 , GLY C:391 , PHE C:392 , GLN D:113 , VAL D:134 , ALA D:137 , MET D:138
BINDING SITE FOR RESIDUE CER C 500
4
AC4
SOFTWARE
VAL C:134 , ALA C:137 , MET C:138 , GLY D:106 , GLY D:107 , ALA D:162 , CYS D:163 , MET D:197 , GLU D:200 , PHE D:201 , HIS D:298 , HIS D:333 , PHE D:390 , GLY D:391 , PHE D:392
BINDING SITE FOR RESIDUE CER D 500
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SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_FABB_ECOLI_001 (A4T, chain A/B/C/D, )
2: VAR_FABB_ECOLI_002 (S140F, chain A/B/C/D, )
3: VAR_FABB_ECOLI_003 (G299S, chain A/B/C/D, )
4: VAR_FABB_ECOLI_004 (A329V, chain A/B/C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FABB_ECOLI_001
*
A
4
T
FABB_ECOLI
---
---
A/B/C/D
A
4
T
2
UniProt
VAR_FABB_ECOLI_002
*
S
140
F
FABB_ECOLI
---
---
A/B/C/D
S
140
F
3
UniProt
VAR_FABB_ECOLI_003
*
G
299
S
FABB_ECOLI
---
---
A/B/C/D
G
299
S
4
UniProt
VAR_FABB_ECOLI_004
*
A
329
V
FABB_ECOLI
---
---
A/B/C/D
A
329
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: B_KETOACYL_SYNTHASE (A:154-170,B:154-170,C:154-170,D:15...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
B_KETOACYL_SYNTHASE
PS00606
Beta-ketoacyl synthases active site.
FABB_ECOLI
154-170
4
A:154-170
B:154-170
C:154-170
D:154-170
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1fj8a1 (A:2-253)
1b: SCOP_d1fj8a2 (A:254-404)
1c: SCOP_d1fj8b1 (B:2-253)
1d: SCOP_d1fj8b2 (B:254-404)
1e: SCOP_d1fj8c1 (C:2-253)
1f: SCOP_d1fj8c2 (C:254-404)
1g: SCOP_d1fj8d1 (D:2-253)
1h: SCOP_d1fj8d2 (D:254-404)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Beta-ketoacyl-ACP synthase I
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d1fj8a1
A:2-253
1b
d1fj8a2
A:254-404
1c
d1fj8b1
B:2-253
1d
d1fj8b2
B:254-404
1e
d1fj8c1
C:2-253
1f
d1fj8c2
C:254-404
1g
d1fj8d1
D:2-253
1h
d1fj8d2
D:254-404
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1fj8A02 (A:260-404)
1b: CATH_1fj8A01 (A:6-259)
1c: CATH_1fj8B01 (B:6-259)
1d: CATH_1fj8C01 (C:6-259)
1e: CATH_1fj8D01 (D:6-259)
1f: CATH_1fj8B02 (B:260-404)
1g: CATH_1fj8C02 (C:260-404)
1h: CATH_1fj8D02 (D:260-404)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Escherichia coli. Organism_taxid: 562.
(23)
1a
1fj8A02
A:260-404
1b
1fj8A01
A:6-259
1c
1fj8B01
B:6-259
1d
1fj8C01
C:6-259
1e
1fj8D01
D:6-259
1f
1fj8B02
B:260-404
1g
1fj8C02
C:260-404
1h
1fj8D02
D:260-404
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (246 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
Header - Biol.Unit 1
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