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1FJ2
Biol. Unit 2
Info
Asym.Unit (86 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN ACYL PROTEIN THIOESTERASE 1 AT 1.5 A RESOLUTION
Authors
:
Y. Devedjiev, Z. Dauter, S. Kuznetsov, T. Jones, Z. Derewenda
Date
:
07 Aug 00 (Deposition) - 29 Nov 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Alpha/Beta Hydrolase, Serine Hydrolase, Sad, Anomalous Diffraction, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Devedjiev, Z. Dauter, S. R. Kuznetsov, T. L. Jones, Z. S. Derewenda
Crystal Structure Of The Human Acyl Protein Thioesterase I From A Single X-Ray Data Set To 1. 5 A.
Structure Fold. Des. V. 8 1137 2000
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1aa: BROMIDE ION (BRaa)
1ab: BROMIDE ION (BRab)
1ac: BROMIDE ION (BRac)
1ad: BROMIDE ION (BRad)
1ae: BROMIDE ION (BRae)
1af: BROMIDE ION (BRaf)
1ag: BROMIDE ION (BRag)
1ah: BROMIDE ION (BRah)
1ai: BROMIDE ION (BRai)
1aj: BROMIDE ION (BRaj)
1ak: BROMIDE ION (BRak)
1al: BROMIDE ION (BRal)
1am: BROMIDE ION (BRam)
1an: BROMIDE ION (BRan)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
1s: BROMIDE ION (BRs)
1t: BROMIDE ION (BRt)
1u: BROMIDE ION (BRu)
1v: BROMIDE ION (BRv)
1w: BROMIDE ION (BRw)
1x: BROMIDE ION (BRx)
1y: BROMIDE ION (BRy)
1z: BROMIDE ION (BRz)
View:
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Sorry, no Info available
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Sites
(23, 23)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC9 (SOFTWARE)
06: ACB (AUTHOR)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
22: DC9 (SOFTWARE)
23: EC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
LEU B:25 , SER B:114 , GLN B:115
BINDING SITE FOR RESIDUE BR B 802
02
AC3
SOFTWARE
ARG B:13 , THR B:16 , HIS B:43 , ILE B:224
BINDING SITE FOR RESIDUE BR B 803
03
AC5
SOFTWARE
ALA B:11 , HOH B:1067
BINDING SITE FOR RESIDUE BR B 805
04
AC7
SOFTWARE
HOH A:905 , HOH A:974 , THR B:28
BINDING SITE FOR RESIDUE BR B 807
05
AC9
SOFTWARE
GLY A:200 , GLN B:207 , GLN B:208
BINDING SITE FOR RESIDUE BR B 810
06
ACB
AUTHOR
SER B:114 , ASP B:169 , HIS B:203
Active site in Chain B
07
BC3
SOFTWARE
PRO B:4 , LEU B:5 , THR B:197 , HOH B:1029
BINDING SITE FOR RESIDUE BR B 814
08
BC4
SOFTWARE
HOH B:847
BINDING SITE FOR RESIDUE BR B 815
09
BC8
SOFTWARE
HOH B:858
BINDING SITE FOR RESIDUE BR B 819
10
BC9
SOFTWARE
HOH A:977 , HOH A:990 , HOH A:1024 , CYS B:168
BINDING SITE FOR RESIDUE BR B 820
11
CC1
SOFTWARE
GLU B:199
BINDING SITE FOR RESIDUE BR B 821
12
CC2
SOFTWARE
HIS B:23 , HOH B:1036 , HOH B:1079
BINDING SITE FOR RESIDUE BR B 822
13
CC5
SOFTWARE
ASP A:167 , GLY A:200 , ASN B:61 , GLN B:207
BINDING SITE FOR RESIDUE BR B 825
14
CC6
SOFTWARE
THR B:197
BINDING SITE FOR RESIDUE BR B 826
15
DC2
SOFTWARE
CYS A:168 , MET A:202 , BR A:832 , HOH B:1048
BINDING SITE FOR RESIDUE BR A 831
16
DC3
SOFTWARE
CYS A:168 , BR A:831 , HOH B:1044 , HOH B:1048
BINDING SITE FOR RESIDUE BR A 832
17
DC4
SOFTWARE
LYS B:183 , HOH B:1020
BINDING SITE FOR RESIDUE BR B 833
18
DC5
SOFTWARE
LYS B:185 , HOH B:1009
BINDING SITE FOR RESIDUE BR B 834
19
DC6
SOFTWARE
SER B:41 , HIS B:43 , HOH B:889 , HOH B:978
BINDING SITE FOR RESIDUE BR B 835
20
DC7
SOFTWARE
ASN B:106 , HOH B:903 , HOH B:1023
BINDING SITE FOR RESIDUE BR B 836
21
DC8
SOFTWARE
GLN B:149 , HOH B:917
BINDING SITE FOR RESIDUE BR B 837
22
DC9
SOFTWARE
LYS B:92 , GLN B:128 , HOH B:1061
BINDING SITE FOR RESIDUE BR B 838
23
EC1
SOFTWARE
LYS B:100 , HOH B:851 , HOH B:1077
BINDING SITE FOR RESIDUE BR B 839
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_060991 (P148S, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_060991
P
153
S
LYPA1_HUMAN
Polymorphism
11549448
B
P
148
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1fj2a_ (A:)
1b: SCOP_d1fj2b_ (B:)
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Classes
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Folds
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Carboxylesterase/thioesterase 1
(8)
Protein domain
:
Acyl protein thioesterase 1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1fj2a_
A:
1b
d1fj2b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1fj2A00 (A:-5-224)
1b: CATH_1fj2B00 (B:-5-224)
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Classes
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Architectures
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
1fj2A00
A:-5-224
1b
1fj2B00
B:-5-224
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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all
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Protein
Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (86 KB)
Header - Asym.Unit
Biol.Unit 1 (41 KB)
Header - Biol.Unit 1
Biol.Unit 2 (42 KB)
Header - Biol.Unit 2
Biol.Unit 3 (80 KB)
Header - Biol.Unit 3
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