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1FHF
Biol. Unit 3
Info
Asym.Unit (152 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (51 KB)
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(1)
Title
:
THE STRUCTURE OF SOYBEAN PEROXIDASE
Authors
:
A. Henriksen, O. Mirza, C. Indiana, K. Welinder, K. Teilum, M. Gajhede
Date
:
01 Aug 00 (Deposition) - 14 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
A. Henriksen, O. Mirza, C. Indiani, K. Teilum, G. Smulevich, K. G. Welinder, M. Gajhede
Structure Of Soybean Seed Coat Peroxidase: A Plant Peroxidase With Unusual Stability And Haem-Apoprotein Interactions.
Protein Sci. V. 10 108 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
3b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
3c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
3d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
3e: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSe)
3f: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSf)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(5, 5)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
5: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ASP C:43 , VAL C:46 , GLY C:48 , ASP C:50 , SER C:52 , VAL C:53
BINDING SITE FOR RESIDUE CA C 501
2
AC6
SOFTWARE
THR C:170 , ASP C:221 , THR C:224 , GLN C:227 , ASP C:229
BINDING SITE FOR RESIDUE CA C 502
3
BC4
SOFTWARE
ARG C:31 , ALA C:34 , SER C:35 , ARG C:38 , PHE C:41 , SER C:73 , PRO C:139 , PHE C:152 , LEU C:165 , HIS C:169 , PHE C:171 , GLY C:172 , ARG C:173 , ALA C:174 , ARG C:175 , THR C:178 , SER C:245 , HOH C:5004
BINDING SITE FOR RESIDUE HEM C 350
4
BC5
SOFTWARE
PHE C:23 , PRO C:141 , HOH C:5003
BINDING SITE FOR RESIDUE TRS C 6001
5
BC6
SOFTWARE
THR C:85 , GLU C:88 , ASN C:89 , LEU C:297
BINDING SITE FOR RESIDUE TRS C 6002
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1fhfa_ (A:)
1b: SCOP_d1fhfb_ (B:)
1c: SCOP_d1fhfc_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Soybean (Glycine max) [TaxId: 3847]
(1)
1a
d1fhfa_
A:
1b
d1fhfb_
B:
1c
d1fhfc_
C:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1fhfA01 (A:2-138,A:283-303)
1b: CATH_1fhfB01 (B:2-138,B:283-303)
1c: CATH_1fhfC01 (C:2-138,C:283-303)
2a: CATH_1fhfA02 (A:139-282)
2b: CATH_1fhfB02 (B:139-282)
2c: CATH_1fhfC02 (C:139-282)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Soybean (Glycine max)
(22)
1a
1fhfA01
A:2-138,A:283-303
1b
1fhfB01
B:2-138,B:283-303
1c
1fhfC01
C:2-138,C:283-303
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Soybean (Glycine max)
(22)
2a
1fhfA02
A:139-282
2b
1fhfB02
B:139-282
2c
1fhfC02
C:139-282
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Pfam Domains
(0, 0)
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Chain C
Asymmetric Unit 1
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Asym.Unit (152 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (51 KB)
Header - Biol.Unit 2
Biol.Unit 3 (51 KB)
Header - Biol.Unit 3
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