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1FGU
Asym. Unit
Info
Asym.Unit (83 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
SSDNA-BINDING DOMAIN OF THE LARGE SUBUNIT OF REPLICATION PROTEIN A
Authors
:
E. Bochkareva, V. Belegu, S. Korolev, A. Bochkarev
Date
:
28 Jul 00 (Deposition) - 07 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ob-Fold, Ssdna-Binding Protein, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Bochkareva, V. Belegu, S. Korolev, A. Bochkarev
Structure Of The Major Single-Stranded Dna-Binding Domain Of Replication Protein A Suggests A Dynamic Mechanism For Dna Binding.
Embo J. V. 20 612 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019236 (T351A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019236
T
351
A
RFA1_HUMAN
Polymorphism
5030755
A/B
T
351
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(7, 14)
Info
All Exons
Exon 1.7 (A:181-196 | B:181-196)
Exon 1.8 (A:196-230 | B:196-230)
Exon 1.9 (A:231-253 | B:231-253)
Exon 1.10 (A:254-318 | B:254-318 (gaps))
Exon 1.11 (A:318-364 | B:318-364)
Exon 1.12 (A:365-414 | B:365-414)
Exon 1.13 (A:414-426 | B:414-426)
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12
7: Boundary 1.12/1.13
8: Boundary 1.13/1.14
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000254719
1
ENSE00001236253
chr17:
1733266-1733420
155
RFA1_HUMAN
1-11
11
0
-
-
1.2
ENST00000254719
2
ENSE00001236273
chr17:
1746097-1746147
51
RFA1_HUMAN
12-28
17
0
-
-
1.3
ENST00000254719
3
ENSE00001236246
chr17:
1747214-1747292
79
RFA1_HUMAN
29-55
27
0
-
-
1.4
ENST00000254719
4
ENSE00001236240
chr17:
1747872-1747980
109
RFA1_HUMAN
55-91
37
0
-
-
1.5
ENST00000254719
5
ENSE00001236237
chr17:
1756395-1756483
89
RFA1_HUMAN
91-121
31
0
-
-
1.6
ENST00000254719
6
ENSE00001198002
chr17:
1775728-1775820
93
RFA1_HUMAN
121-152
32
0
-
-
1.7
ENST00000254719
7
ENSE00001197997
chr17:
1778955-1779087
133
RFA1_HUMAN
152-196
45
2
A:181-196
B:181-196
16
16
1.8
ENST00000254719
8
ENSE00000904194
chr17:
1780506-1780608
103
RFA1_HUMAN
196-230
35
2
A:196-230
B:196-230
35
35
1.9
ENST00000254719
9
ENSE00000904193
chr17:
1782287-1782355
69
RFA1_HUMAN
231-253
23
2
A:231-253
B:231-253
23
23
1.10
ENST00000254719
10
ENSE00000904192
chr17:
1782509-1782701
193
RFA1_HUMAN
254-318
65
2
A:254-318
B:254-318 (gaps)
65
65
1.11
ENST00000254719
11
ENSE00001310575
chr17:
1782854-1782993
140
RFA1_HUMAN
318-364
47
2
A:318-364
B:318-364
47
47
1.12
ENST00000254719
12
ENSE00001197976
chr17:
1783837-1783985
149
RFA1_HUMAN
365-414
50
2
A:365-414
B:365-414
50
50
1.13
ENST00000254719
13
ENSE00001132340
chr17:
1787106-1787238
133
RFA1_HUMAN
414-458
45
2
A:414-426
B:414-426
13
13
1.14
ENST00000254719
14
ENSE00001116065
chr17:
1791969-1792145
177
RFA1_HUMAN
459-517
59
0
-
-
1.15
ENST00000254719
15
ENSE00001116060
chr17:
1795127-1795234
108
RFA1_HUMAN
518-553
36
0
-
-
1.16
ENST00000254719
16
ENSE00001116063
chr17:
1798303-1798389
87
RFA1_HUMAN
554-582
29
0
-
-
1.17
ENST00000254719
17
ENSE00001236266
chr17:
1800365-1802848
2484
RFA1_HUMAN
583-616
34
0
-
-
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1fgua1 (A:181-298)
1b: SCOP_d1fgua2 (A:299-426)
1c: SCOP_d1fgub1 (B:181-289)
1d: SCOP_d1fgub2 (B:298-426)
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Protein Domains
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(
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Organisms
(
)
(
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Single strand DNA-binding domain, SSB
(96)
Protein domain
:
Replication protein A 70 KDa subunit (RPA70)
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1fgua1
A:181-298
1b
d1fgua2
A:299-426
1c
d1fgub1
B:181-289
1d
d1fgub2
B:298-426
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1fguB01 (B:184-288)
1b: CATH_1fguA01 (A:183-296)
1c: CATH_1fguA02 (A:297-420)
1d: CATH_1fguB02 (B:289-420)
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Organisms
(
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
1fguB01
B:184-288
1b
1fguA01
A:183-296
1c
1fguA02
A:297-420
1d
1fguB02
B:289-420
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (83 KB)
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