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1FGJ
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (261 KB)
Biol.Unit 2 (260 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HYDROXYLAMINE OXIDOREDUCTASE
Authors
:
N. Tanaka, N. Igarashi, H. Moriyama
Date
:
03 Mar 97 (Deposition) - 04 Mar 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Oxidoreductase, Nitrification
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
N. Igarashi, H. Moriyama, T. Fujiwara, Y. Fukumori, N. Tanaka
The 2. 8 A Structure Of Hydroxylamine Oxidoreductase From A Nitrifying Chemoautotrophic Bacterium, Nitrosomonas Europaea.
Nat. Struct. Biol. V. 4 276 1997
[
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: HEME C (HECa)
1b: HEME C (HECb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
2i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
2j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
2k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
2l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
2n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEC
2
Ligand/Ion
HEME C
2
HEM
14
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:57 , TYR A:64 , PRO A:67 , SER A:69 , ALA A:74 , CYS A:79 , CYS A:82 , HIS A:83 , GLU A:86 , CYS A:145 , ILE A:146 , HIS A:149 , HIS A:160 , SER A:365 , GLU A:366 , ARG A:367 , HEM A:548
BINDING SITE FOR RESIDUE HEM A 547
02
AC2
SOFTWARE
TYR A:57 , PRO A:60 , HIS A:83 , TRP A:90 , TRP A:94 , HIS A:99 , VAL A:143 , GLY A:144 , CYS A:145 , CYS A:148 , HIS A:149 , MET A:166 , PRO A:167 , LYS A:238 , ASP A:240 , ARG A:245 , HIS A:246 , PHE A:248 , HIS A:364 , SER A:365 , HEM A:547 , HEM A:549
BINDING SITE FOR RESIDUE HEM A 548
03
AC3
SOFTWARE
THR A:98 , HIS A:99 , LYS A:117 , LYS A:120 , LEU A:121 , VAL A:143 , CYS A:172 , CYS A:175 , HIS A:176 , CYS A:239 , PHE A:248 , ALA A:250 , HEM A:548 , HEM A:551
BINDING SITE FOR RESIDUE HEM A 549
04
AC4
SOFTWARE
TRP A:197 , ARG A:201 , ALA A:210 , ASN A:211 , THR A:214 , GLY A:228 , CYS A:229 , CYS A:232 , HIS A:233 , THR A:261 , CYS A:262 , HIS A:263 , HIS A:268 , ALA A:332 , ASN A:333 , THR A:466 , TYR A:467 , HEM A:552 , HEM A:553
BINDING SITE FOR RESIDUE HEC A 550
05
AC5
SOFTWARE
TYR A:116 , LYS A:117 , CYS A:172 , HIS A:176 , GLU A:179 , HIS A:204 , ASN A:235 , CYS A:239 , CYS A:242 , HIS A:243 , SER A:253 , ARG A:254 , ARG A:295 , LEU A:296 , MET A:315 , HIS A:323 , HEM A:549 , HEM A:552
BINDING SITE FOR RESIDUE HEM A 551
06
AC6
SOFTWARE
PRO A:202 , SER A:203 , HIS A:204 , ASP A:207 , ALA A:210 , MET A:231 , CYS A:232 , HIS A:233 , ASN A:235 , ASN A:241 , CYS A:242 , ALA A:258 , CYS A:259 , CYS A:262 , HIS A:263 , ILE A:325 , THR A:329 , HEC A:550 , HEM A:551 , HEM A:553
BINDING SITE FOR RESIDUE HEM A 552
07
AC7
SOFTWARE
HIS A:263 , ASN A:270 , TYR A:274 , THR A:309 , CYS A:310 , CYS A:313 , HIS A:314 , ARG A:330 , TRP A:331 , TRP A:356 , MET A:376 , HIS A:459 , HEC A:550 , HEM A:552 , HEM A:554
BINDING SITE FOR RESIDUE HEM A 553
08
AC8
SOFTWARE
TRP A:90 , MET A:231 , LYS A:238 , ASP A:240 , THR A:244 , ARG A:245 , HIS A:279 , PHE A:300 , ASN A:306 , ALA A:307 , PRO A:308 , THR A:359 , CYS A:360 , CYS A:363 , HIS A:364 , PHE A:368 , TYR A:372 , VAL A:460 , HEM A:553
BINDING SITE FOR RESIDUE HEM A 554
09
AC9
SOFTWARE
TYR B:57 , TYR B:64 , PRO B:67 , ALA B:74 , ASP B:78 , CYS B:79 , CYS B:82 , HIS B:83 , HIS B:149 , HIS B:160 , SER B:365 , GLU B:366 , ARG B:367 , HEM B:548
BINDING SITE FOR RESIDUE HEM B 547
10
BC1
SOFTWARE
TYR B:57 , HIS B:83 , TRP B:90 , HIS B:99 , VAL B:143 , GLY B:144 , CYS B:145 , CYS B:148 , HIS B:149 , MET B:166 , PRO B:167 , LYS B:238 , ASP B:240 , ARG B:245 , HIS B:246 , PHE B:248 , HIS B:364 , SER B:365 , HEM B:547 , HEM B:549
BINDING SITE FOR RESIDUE HEM B 548
11
BC2
SOFTWARE
THR B:98 , HIS B:99 , LEU B:102 , LYS B:117 , LYS B:120 , LEU B:121 , VAL B:143 , CYS B:172 , CYS B:175 , HIS B:176 , CYS B:239 , PHE B:248 , ALA B:250 , HEM B:548 , HEM B:551
BINDING SITE FOR RESIDUE HEM B 549
12
BC3
SOFTWARE
TRP B:197 , ARG B:201 , ALA B:210 , ASN B:211 , THR B:214 , TRP B:217 , GLY B:228 , CYS B:229 , CYS B:232 , HIS B:233 , THR B:261 , CYS B:262 , HIS B:263 , HIS B:268 , ALA B:332 , ASN B:333 , THR B:466 , TYR B:467 , HEM B:552 , HEM B:553
BINDING SITE FOR RESIDUE HEC B 550
13
BC4
SOFTWARE
TYR B:116 , LYS B:117 , CYS B:172 , HIS B:176 , GLU B:179 , ASN B:235 , CYS B:239 , CYS B:242 , HIS B:243 , SER B:253 , ARG B:254 , ARG B:295 , LEU B:296 , MET B:315 , HIS B:323 , HEM B:549 , HEM B:552
BINDING SITE FOR RESIDUE HEM B 551
14
BC5
SOFTWARE
PRO B:202 , SER B:203 , HIS B:204 , ALA B:210 , CYS B:232 , HIS B:233 , ASN B:235 , ASN B:241 , CYS B:259 , CYS B:262 , HIS B:263 , ALA B:332 , HEC B:550 , HEM B:551 , HEM B:553
BINDING SITE FOR RESIDUE HEM B 552
15
BC6
SOFTWARE
CYS B:259 , HIS B:263 , ASN B:270 , TRP B:271 , TYR B:274 , PRO B:308 , THR B:309 , CYS B:310 , CYS B:313 , HIS B:314 , ARG B:330 , TRP B:331 , TRP B:356 , ALA B:458 , HIS B:459 , HEC B:550 , HEM B:552 , HEM B:554
BINDING SITE FOR RESIDUE HEM B 553
16
BC7
SOFTWARE
LYS B:238 , ASP B:240 , THR B:244 , ARG B:245 , HIS B:279 , LEU B:282 , ASN B:306 , THR B:359 , CYS B:360 , CYS B:363 , HIS B:364 , PHE B:368 , TYR B:372 , HEM B:553
BINDING SITE FOR RESIDUE HEM B 554
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:74-369,B:74-369)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
HAO_NITEU
98-393
2
A:74-369
B:74-369
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1fgja_ (A:)
1b: SCOP_d1fgjb_ (B:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
Hydroxylamine oxidoreductase, HAO
(1)
Nitrosomonas europaea [TaxId: 915]
(1)
1a
d1fgja_
A:
1b
d1fgjb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1fgjA01 (A:1-240)
1b: CATH_1fgjB01 (B:1-240)
2a: CATH_1fgjA02 (A:270-499)
2b: CATH_1fgjB02 (B:270-499)
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Organisms
(
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Hydroxylamine Oxidoreductase; Chain A, domain 1
(1)
Homologous Superfamily
:
Hydroxylamine Oxidoreductase; Chain A, domain 1
(1)
Nitrosomonas europaea. Organism_taxid: 915.
(1)
1a
1fgjA01
A:1-240
1b
1fgjB01
B:1-240
Architecture
:
Up-down Bundle
(3216)
Topology
:
Hydroxylamine Oxidoreductase; Chain A, domain 2
(1)
Homologous Superfamily
:
Hydroxylamine Oxidoreductase; Chain A, domain 2
(1)
Nitrosomonas europaea. Organism_taxid: 915.
(1)
2a
1fgjA02
A:270-499
2b
1fgjB02
B:270-499
[
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Pfam Domains
(0, 0)
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all PFAM domains
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