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1FF7
Asym. Unit
Info
Asym.Unit (220 KB)
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Models
(20 )
Title
:
THE FIRST EGF-LIKE DOMAIN FROM HUMAN BLOOD COAGULATION FVII (FUCOSYLATED AT SER-60), NMR, 20 STRUCTURES
Authors
:
Y. -H. Kao, G. F. Lee, Y. Wang, M. A. Starovasnik, R. F. Kelley, M. W. Spellman, L. Lerner
Date
:
19 Feb 99 (Deposition) - 16 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Factor Vii, Blood Coagulation, Egf-Like Domain, Glycoprotein, Fucosylation, O- Linked Fucose, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. H. Kao, G. F. Lee, Y. Wang, M. A. Starovasnik, R. F. Kelley, M. W. Spellman, L. Lerner
The Effect Of O-Fucosylation On The First Egf-Like Domain From Human Blood Coagulation Factor Vii.
Biochemistry V. 38 7097 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:60 , PHE A:71
BINDING SITE FOR RESIDUE FUC A 91
[
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]
SAPs(SNPs)/Variants
(13, 13)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_065376 (N57D, chain A, )
02: VAR_015136 (S60P, chain A, )
03: VAR_014407 (C61F, chain A, )
04: VAR_014408 (L65P, chain A, )
05: VAR_014409 (Y68C, chain A, )
06: VAR_065377 (G78D, chain A, )
07: VAR_006497 (R79K, chain A, )
08: VAR_006498 (R79Q, chain A, )
09: VAR_006499 (R79W, chain A, )
10: VAR_065378 (G88S, chain A, )
11: VAR_006501 (S89C, chain A, )
12: VAR_006500 (S89S, chain A, )
13: VAR_014411 (S89V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065376
N
117
D
FA7_HUMAN
Disease (FA7D)
---
A
N
57
D
02
UniProt
VAR_015136
S
120
P
FA7_HUMAN
Disease (FA7D)
---
A
S
60
P
03
UniProt
VAR_014407
C
121
F
FA7_HUMAN
Disease (FA7D)
---
A
C
61
F
04
UniProt
VAR_014408
L
125
P
FA7_HUMAN
Disease (FA7D)
---
A
L
65
P
05
UniProt
VAR_014409
Y
128
C
FA7_HUMAN
Disease (FA7D)
---
A
Y
68
C
06
UniProt
VAR_065377
G
138
D
FA7_HUMAN
Disease (FA7D)
---
A
G
78
D
07
UniProt
VAR_006497
R
139
K
FA7_HUMAN
Disease (FA7D)
---
A
R
79
K
08
UniProt
VAR_006498
R
139
Q
FA7_HUMAN
Disease (FA7D)
150525536
A
R
79
Q
09
UniProt
VAR_006499
R
139
W
FA7_HUMAN
Disease (FA7D)
---
A
R
79
W
10
UniProt
VAR_065378
G
156
S
FA7_HUMAN
Disease (FA7D)
---
A
G
88
S
11
UniProt
VAR_006501
G
157
C
FA7_HUMAN
Disease (FA7D)
---
A
S
89
C
12
UniProt
VAR_006500
G
157
S
FA7_HUMAN
Disease (FA7D)
---
A
S
89
S
13
UniProt
VAR_014411
G
157
V
FA7_HUMAN
Disease (FA7D)
---
A
S
89
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:46-82)
2: EGF_CA (A:46-70)
3: ASX_HYDROXYL (A:61-72)
4: EGF_1 (A:70-81)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
FA7_HUMAN
106-142
1
A:46-82
2
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
FA7_HUMAN
106-130
1
A:46-70
3
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
FA7_HUMAN
121-132
1
A:61-72
4
EGF_1
PS00022
EGF-like domain signature 1.
FA7_HUMAN
130-141
1
A:70-81
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.4a (A:45-46)
Exon 1.4c (A:46-84)
Exon 1.7 (A:84-90 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3c/1.4a
2: Boundary 1.4a/1.4c
3: Boundary 1.4c/1.7
4: Boundary 1.7/1.8c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000375581
1b
ENSE00001891092
chr13:
113760121-113760219
99
FA7_HUMAN
1-22
22
0
-
-
1.2
ENST00000375581
2
ENSE00000862519
chr13:
113761159-113761224
66
FA7_HUMAN
22-44
23
0
-
-
1.3c
ENST00000375581
3c
ENSE00001135032
chr13:
113765004-113765164
161
FA7_HUMAN
44-97
54
0
-
-
1.4a
ENST00000375581
4a
ENSE00000862522
chr13:
113768066-113768090
25
FA7_HUMAN
98-106
9
1
A:45-46
2
1.4c
ENST00000375581
4c
ENSE00001135014
chr13:
113768161-113768274
114
FA7_HUMAN
106-144
39
1
A:46-84
39
1.7
ENST00000375581
7
ENSE00001786842
chr13:
113769974-113770114
141
FA7_HUMAN
144-191
48
1
A:84-90 (gaps)
15
1.8c
ENST00000375581
8c
ENSE00001134999
chr13:
113771080-113771189
110
FA7_HUMAN
191-227
37
0
-
-
1.9
ENST00000375581
9
ENSE00000687189
chr13:
113771787-113771910
124
FA7_HUMAN
228-269
42
0
-
-
1.10b
ENST00000375581
10b
ENSE00001467515
chr13:
113772727-113774995
2269
FA7_HUMAN
269-466
198
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ff7a_ (A:)
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Coagulation factor VIIa
(45)
Human (Homo sapiens) [TaxId: 9606]
(45)
1a
d1ff7a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ff7A00 (A:45-90)
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
1a
1ff7A00
A:45-90
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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