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1FDU
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 MUTANT H221L COMPLEXED WITH ESTRADIOL AND NADP+
Authors
:
C. Mazza, R. Breton, D. Housset, J. -C. Fontecilla-Camps
Date
:
14 Jan 98 (Deposition) - 27 May 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Dehydrogenase, 17-Beta-Hydroxysteroid, Mutant, Estradiol, Nadp
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Mazza, R. Breton, D. Housset, J. C. Fontecilla-Camps
Unusual Charge Stabilization Of Nadp+ In 17Beta-Hydroxysteroid Dehydrogenase.
J. Biol. Chem. V. 273 8145 1998
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: ESTRADIOL (ESTa)
1b: ESTRADIOL (ESTb)
1c: ESTRADIOL (ESTc)
1d: ESTRADIOL (ESTd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EST
4
Ligand/Ion
ESTRADIOL
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: CAT (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:12 , GLY A:13 , HIS A:17 , THR A:190
BINDING SITE FOR RESIDUE SO4 A 401
02
AC2
SOFTWARE
SER B:12 , GLY B:13 , HIS B:17 , ARG B:44 , PRO B:233
BINDING SITE FOR RESIDUE SO4 B 400
03
AC3
SOFTWARE
SER C:12 , GLY C:13 , HIS C:17 , ARG C:44 , THR C:190 , HOH C:660
BINDING SITE FOR RESIDUE SO4 C 403
04
AC4
SOFTWARE
SER D:12 , GLY D:13 , HIS D:17 , ARG D:44 , HIS D:189 , THR D:190 , PRO D:233
BINDING SITE FOR RESIDUE SO4 D 402
05
AC5
SOFTWARE
SER A:142 , VAL A:143 , GLY A:144 , LEU A:149 , TYR A:155 , PRO A:187 , PHE A:192 , TYR A:218 , SER A:222 , NAP A:361
BINDING SITE FOR RESIDUE EST A 351
06
AC6
SOFTWARE
GLY A:9 , SER A:11 , SER A:12 , GLY A:13 , ILE A:14 , ARG A:37 , LEU A:64 , ASP A:65 , VAL A:66 , ARG A:67 , ASN A:90 , ALA A:91 , GLY A:92 , VAL A:113 , THR A:140 , GLY A:141 , SER A:142 , TYR A:155 , LYS A:159 , CYS A:185 , GLY A:186 , PRO A:187 , VAL A:188 , THR A:190 , ALA A:191 , PHE A:192 , LYS A:195 , PHE A:226 , EST A:351 , HOH A:508 , HOH A:524 , HOH A:565 , HOH A:630 , HOH A:673
BINDING SITE FOR RESIDUE NAP A 361
07
AC7
SOFTWARE
SER B:142 , VAL B:143 , GLY B:144 , LEU B:149 , TYR B:155 , PHE B:226 , PHE B:259 , MET B:279 , NAP B:364
BINDING SITE FOR RESIDUE EST B 354
08
AC8
SOFTWARE
GLY B:9 , SER B:11 , SER B:12 , GLY B:13 , ILE B:14 , ARG B:37 , LEU B:64 , ASP B:65 , VAL B:66 , ARG B:67 , ASN B:90 , ALA B:91 , THR B:140 , GLY B:141 , SER B:142 , LYS B:159 , CYS B:185 , GLY B:186 , PRO B:187 , VAL B:188 , THR B:190 , ALA B:191 , PHE B:192 , LYS B:195 , PHE B:226 , EST B:354 , HOH B:551 , HOH B:554 , HOH B:614 , HOH B:641 , HOH B:645
BINDING SITE FOR RESIDUE NAP B 364
09
AC9
SOFTWARE
SER C:142 , VAL C:143 , GLY C:144 , LEU C:149 , TYR C:155 , PRO C:187 , TYR C:218 , SER C:222 , PHE C:259 , MET C:279 , VAL C:283 , NAP C:363
BINDING SITE FOR RESIDUE EST C 353
10
BC1
SOFTWARE
GLY C:9 , SER C:11 , SER C:12 , GLY C:13 , ILE C:14 , ARG C:37 , LEU C:64 , ASP C:65 , VAL C:66 , ARG C:67 , ASN C:90 , ALA C:91 , GLY C:92 , VAL C:113 , THR C:140 , GLY C:141 , SER C:142 , TYR C:155 , LYS C:159 , CYS C:185 , GLY C:186 , PRO C:187 , VAL C:188 , THR C:190 , PHE C:192 , LYS C:195 , PHE C:226 , EST C:353 , HOH C:509 , HOH C:575 , HOH C:678
BINDING SITE FOR RESIDUE NAP C 363
11
BC2
SOFTWARE
SER D:142 , VAL D:143 , GLY D:144 , LEU D:149 , TYR D:155 , PHE D:259 , NAP D:362
BINDING SITE FOR RESIDUE EST D 352
12
BC3
SOFTWARE
GLY D:9 , SER D:11 , SER D:12 , GLY D:13 , ILE D:14 , ARG D:37 , LEU D:64 , ASP D:65 , VAL D:66 , ASN D:90 , ALA D:91 , GLY D:92 , THR D:140 , GLY D:141 , SER D:142 , LYS D:159 , CYS D:185 , GLY D:186 , PRO D:187 , VAL D:188 , THR D:190 , ALA D:191 , PHE D:192 , LYS D:195 , PHE D:226 , EST D:352 , HOH D:530 , HOH D:590 , HOH D:639
BINDING SITE FOR RESIDUE NAP D 362
13
CAT
UNKNOWN
SER A:142 , TYR A:155 , LYS A:159
CATALYTIC SITE.
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006951 (A237V, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006951
A
238
V
DHB1_HUMAN
Polymorphism
---
A/B/C/D
A
237
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:142-170,B:142-170,C:142-170,D:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHB1_HUMAN
143-171
4
A:142-170
B:142-170
C:142-170
D:142-170
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1fdua_ (A:)
1b: SCOP_d1fdub_ (B:)
1c: SCOP_d1fduc_ (C:)
1d: SCOP_d1fdud_ (D:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Human estrogenic 17beta-hydroxysteroid dehydrogenase
(22)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d1fdua_
A:
1b
d1fdub_
B:
1c
d1fduc_
C:
1d
d1fdud_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1fduB00 (B:1-285)
1b: CATH_1fduA00 (A:1-285)
1c: CATH_1fduD00 (D:1-285)
1d: CATH_1fduC00 (C:1-285)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1fduB00
B:1-285
1b
1fduA00
A:1-285
1c
1fduD00
D:1-285
1d
1fduC00
C:1-285
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (193 KB)
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