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Getting 'Biological Unit' information from database.
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1FD7
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (97 KB)
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(1)
Title
:
HEAT-LABILE ENTEROTOXIN B-PENTAMER WITH BOUND LIGAND BMSC001
Authors
:
E. Fan, E. A. Merritt, J. Pickens, M. Ahn, W. G. J. Hol
Date
:
19 Jul 00 (Deposition) - 10 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : D,E,F,G,H,L,M,N,O,P
Biol. Unit 1: D,E,F,G,H (1x)
Biol. Unit 2: L,M,N,O,P (1x)
Keywords
:
Enterotoxin, Receptor, Ligand, B-Pentamer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Fan, E. A. Merritt, Z. Zhang, J. C. Pickens, C. Roach, M. Ahn, W. G. Hol
Exploration Of The Gm1 Receptor-Binding Site Of Heat-Labile Enterotoxin And Cholera Toxin By Phenyl-Ring-Containing Galactose Derivatives.
Acta Crystallogr. , Sect. D V. 57 201 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1a)
1b: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1b)
1c: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1c)
1d: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1d)
1e: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1e)
1f: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1f)
1g: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1g)
1h: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1h)
1i: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1i)
1j: N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)... (AI1j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AI1
10
Ligand/Ion
N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)-BENZAMIDE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR D:12 , GLU D:51 , GLN D:56 , HIS D:57 , GLN D:61 , TRP D:88 , ASN D:90 , LYS D:91 , HOH D:2101 , HOH D:2102 , HOH D:2103 , HOH D:2105 , LYS E:34
BINDING SITE FOR RESIDUE AI1 D 104
02
AC2
SOFTWARE
GLU E:11 , TYR E:12 , GLU E:51 , GLN E:56 , HIS E:57 , GLN E:61 , TRP E:88 , ASN E:90 , LYS E:91 , HOH E:2201 , HOH E:2202 , HOH E:2203 , HOH E:2205 , HOH F:1454 , HOH G:1250
BINDING SITE FOR RESIDUE AI1 E 104
03
AC3
SOFTWARE
ARG D:13 , GLU F:11 , TYR F:12 , ARG F:13 , GLU F:51 , GLN F:56 , HIS F:57 , GLN F:61 , TRP F:88 , ASN F:90 , LYS F:91 , HOH F:2301 , HOH F:2303 , HOH F:2305 , HOH F:2307 , HOH G:2302
BINDING SITE FOR RESIDUE AI1 F 104
04
AC4
SOFTWARE
GLU G:11 , TYR G:12 , GLU G:51 , GLN G:56 , HIS G:57 , GLN G:61 , TRP G:88 , ASN G:90 , LYS G:91 , HOH G:1274 , HOH G:2401 , HOH G:2402 , HOH G:2403 , HOH G:2405 , HOH H:1187
BINDING SITE FOR RESIDUE AI1 G 104
05
AC5
SOFTWARE
GLY D:33 , LYS D:34 , HOH D:2502 , TYR H:12 , GLU H:51 , GLN H:56 , GLN H:61 , TRP H:88 , ASN H:90 , LYS H:91 , HOH H:1711 , HOH H:1859 , HOH H:2501 , HOH H:2505
BINDING SITE FOR RESIDUE AI1 H 104
06
AC6
SOFTWARE
GLU L:11 , TYR L:12 , GLU L:51 , GLN L:56 , HIS L:57 , GLN L:61 , TRP L:88 , ASN L:90 , LYS L:91 , HOH L:1759 , HOH L:2601 , HOH L:2602 , HOH L:2603 , HOH L:2605 , HOH L:2607
BINDING SITE FOR RESIDUE AI1 L 104
07
AC7
SOFTWARE
TYR M:12 , GLU M:51 , GLN M:56 , HIS M:57 , GLN M:61 , TRP M:88 , ASN M:90 , LYS M:91 , HOH M:1259 , HOH M:2701 , HOH M:2703 , HOH M:2705 , HOH M:2707
BINDING SITE FOR RESIDUE AI1 M 104
08
AC8
SOFTWARE
GLU N:11 , TYR N:12 , ARG N:13 , GLU N:51 , GLN N:56 , HIS N:57 , GLN N:61 , TRP N:88 , ASN N:90 , LYS N:91 , HOH N:2801 , HOH N:2802 , HOH N:2803 , HOH N:2805 , LYS O:34
BINDING SITE FOR RESIDUE AI1 N 104
09
AC9
SOFTWARE
GLU O:11 , TYR O:12 , GLU O:51 , GLN O:56 , HIS O:57 , GLN O:61 , TRP O:88 , ASN O:90 , LYS O:91 , HOH O:2902 , HOH O:2905 , HOH O:2907
BINDING SITE FOR RESIDUE AI1 O 104
10
BC1
SOFTWARE
HOH L:2002 , GLU P:11 , TYR P:12 , GLU P:51 , GLN P:56 , HIS P:57 , GLN P:61 , TRP P:88 , ASN P:90 , LYS P:91 , HOH P:1858 , HOH P:2001 , HOH P:2003 , HOH P:2005
BINDING SITE FOR RESIDUE AI1 P 104
[
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]
SAPs(SNPs)/Variants
(1, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_ELBP_ECOLX_001 (T75A, chain D/E/F/G/H/L/M/N/O/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ELBP_ECOLX_001
*
T
96
A
ELBP_ECOLX
---
---
D/E/F/G/H/L/M/N/O/P
T
75
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1fd7d_ (D:)
1b: SCOP_d1fd7e_ (E:)
1c: SCOP_d1fd7f_ (F:)
1d: SCOP_d1fd7g_ (G:)
1e: SCOP_d1fd7h_ (H:)
1f: SCOP_d1fd7l_ (L:)
1g: SCOP_d1fd7m_ (M:)
1h: SCOP_d1fd7n_ (N:)
1i: SCOP_d1fd7o_ (O:)
1j: SCOP_d1fd7p_ (P:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Heat-labile toxin
(24)
Escherichia coli, type IB [TaxId: 562]
(21)
1a
d1fd7d_
D:
1b
d1fd7e_
E:
1c
d1fd7f_
F:
1d
d1fd7g_
G:
1e
d1fd7h_
H:
1f
d1fd7l_
L:
1g
d1fd7m_
M:
1h
d1fd7n_
N:
1i
d1fd7o_
O:
1j
d1fd7p_
P:
[
close SCOP info
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1fd7D00 (D:1-103)
1b: CATH_1fd7E00 (E:1-103)
1c: CATH_1fd7F00 (F:1-103)
1d: CATH_1fd7G00 (G:1-103)
1e: CATH_1fd7H00 (H:1-103)
1f: CATH_1fd7L00 (L:1-103)
1g: CATH_1fd7M00 (M:1-103)
1h: CATH_1fd7N00 (N:1-103)
1i: CATH_1fd7O00 (O:1-103)
1j: CATH_1fd7P00 (P:1-103)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Escherichia coli. Organism_taxid: 562.
(6)
1a
1fd7D00
D:1-103
1b
1fd7E00
E:1-103
1c
1fd7F00
F:1-103
1d
1fd7G00
G:1-103
1e
1fd7H00
H:1-103
1f
1fd7L00
L:1-103
1g
1fd7M00
M:1-103
1h
1fd7N00
N:1-103
1i
1fd7O00
O:1-103
1j
1fd7P00
P:1-103
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (195 KB)
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