PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1FCJ
Biol. Unit 2
Info
Asym.Unit (214 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (107 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF OASS COMPLEXED WITH CHLORIDE AND SULFATE
Authors
:
P. Burkhard, C. Tai, J. N. Jansonius, P. F. Cook
Date
:
18 Jul 00 (Deposition) - 18 Oct 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Homodimer, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Burkhard, C. H. Tai, J. N. Jansonius, P. F. Cook
Identification Of An Allosteric Anion-Binding Site On O-Acetylserine Sulfhydrylase: Structure Of The Enzyme With Chloride Bound.
J. Mol. Biol. V. 303 279 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
3
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
THR B:68 , ASN B:69 , GLY B:70 , ASN B:71 , THR B:72 , GLY B:73 , GLN B:142 , HOH B:3051 , HOH B:3109 , HOH B:3128
BINDING SITE FOR RESIDUE SO4 B 2003
2
AC4
SOFTWARE
THR D:68 , ASN D:69 , GLY D:70 , ASN D:71 , THR D:72 , GLY D:73 , GLN D:142 , HOH D:3250
BINDING SITE FOR RESIDUE SO4 D 2004
3
AC7
SOFTWARE
ASN B:7 , LEU D:268
BINDING SITE FOR RESIDUE CL B 2007
4
AC8
SOFTWARE
LEU B:268 , ASN D:7
BINDING SITE FOR RESIDUE CL D 2008
5
BC2
SOFTWARE
LYS B:41 , ASN B:71 , GLY B:174 , VAL B:175 , GLY B:176 , THR B:177 , GLY B:178 , GLY B:179 , THR B:180 , GLY B:228 , ILE B:229 , SER B:272 , PRO B:299 , SER B:300 , HOH B:3007 , HOH B:3014 , HOH B:3044 , HOH B:3051
BINDING SITE FOR RESIDUE PLP B 3003
6
BC3
SOFTWARE
LYS D:41 , ASN D:71 , GLY D:174 , VAL D:175 , GLY D:176 , THR D:177 , GLY D:178 , THR D:180 , GLY D:228 , ILE D:229 , SER D:272 , PRO D:299 , HOH D:3005 , HOH D:3018 , HOH D:3039
BINDING SITE FOR RESIDUE PLP D 3004
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYS_SYNTHASE (B:30-48,D:30-48)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYS_SYNTHASE
PS00901
Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site.
CYSK_SALTY
31-49
2
-
B:30-48
-
D:30-48
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1fcja_ (A:)
1b: SCOP_d1fcjb_ (B:)
1c: SCOP_d1fcjc_ (C:)
1d: SCOP_d1fcjd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
O-acetylserine sulfhydrylase (Cysteine synthase)
(12)
Salmonella typhimurium [TaxId: 90371]
(3)
1a
d1fcja_
A:
1b
d1fcjb_
B:
1c
d1fcjc_
C:
1d
d1fcjd_
D:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1fcjA01 (A:1-34,A:156-302)
1b: CATH_1fcjD01 (D:1-34,D:156-302)
1c: CATH_1fcjB01 (B:1-34,B:156-304)
1d: CATH_1fcjC01 (C:1-34,C:156-304)
1e: CATH_1fcjA02 (A:35-142)
1f: CATH_1fcjB02 (B:35-142)
1g: CATH_1fcjC02 (C:35-142)
1h: CATH_1fcjD02 (D:35-142)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Salmonella typhimurium. Organism_taxid: 602
(1)
1a
1fcjA01
A:1-34,A:156-302
1b
1fcjD01
D:1-34,D:156-302
1c
1fcjB01
B:1-34,B:156-304
1d
1fcjC01
C:1-34,C:156-304
1e
1fcjA02
A:35-142
1f
1fcjB02
B:35-142
1g
1fcjC02
C:35-142
1h
1fcjD02
D:35-142
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (214 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1FCJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help