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Biol. Unit 2
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Asym.Unit (533 KB)
Biol.Unit 1 (352 KB)
Biol.Unit 2 (350 KB)
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Title
:
CRYSTAL STRUCTURE OF ZINC-CONTAINING E.COLI GTP CYCLOHYDROLASE I
Authors
:
G. Auerbach, A. Herrmann, A. Bracher, A. Bader, M. Gutlich, M. Fischer, M. Neukamm, H. Nar, M. Garrido-Franco, J. Richardson, R. Huber, A. Bacher
Date
:
17 Jul 00 (Deposition) - 14 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1: A,B,C,D,E (2x)
Biol. Unit 2: F,G,H,I,J,K,L,M,N,O (1x)
Keywords
:
Hydrolase, Allosteric Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Auerbach, A. Herrmann, A. Bracher, G. Bader, M. Gutlich, M. Fischer, M. Neukamm, M. Garrido-Franco, J. Richardson, H. Nar, R. Huber, A. Bacher
Zinc Plays A Key Role In Human And Bacterial Gtp Cyclohydrolase I.
Proc. Natl. Acad. Sci. Usa V. 97 13567 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
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Sites
(20, 20)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
20: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
CYS F:110 , HIS F:112 , HIS F:113 , CYS F:181 , HOH F:3336
BINDING SITE FOR RESIDUE ZN F 3321
02
BC3
SOFTWARE
ARG F:185 , SER G:135 , LYS G:136 , ARG G:139
BINDING SITE FOR RESIDUE CL G 3351
03
BC4
SOFTWARE
CYS G:110 , HIS G:112 , HIS G:113 , CYS G:181 , HOH G:3337
BINDING SITE FOR RESIDUE ZN G 3322
04
BC5
SOFTWARE
ARG G:185 , SER H:135 , LYS H:136 , ARG H:139
BINDING SITE FOR RESIDUE CL H 3352
05
BC6
SOFTWARE
CYS H:110 , HIS H:112 , HIS H:113 , CYS H:181 , HOH H:3338
BINDING SITE FOR RESIDUE ZN H 3323
06
BC7
SOFTWARE
ARG H:185 , SER I:135 , LYS I:136 , ARG I:139
BINDING SITE FOR RESIDUE CL I 3353
07
BC8
SOFTWARE
CYS I:110 , HIS I:113 , CYS I:181 , HOH I:3339
BINDING SITE FOR RESIDUE ZN I 3324
08
BC9
SOFTWARE
ARG I:185 , SER J:135 , LYS J:136 , ARG J:139
BINDING SITE FOR RESIDUE CL J 3354
09
CC1
SOFTWARE
CYS J:110 , HIS J:112 , HIS J:113 , CYS J:181 , HOH J:3340
BINDING SITE FOR RESIDUE ZN J 3325
10
CC2
SOFTWARE
SER F:135 , LYS F:136 , ARG F:139 , ARG J:185
BINDING SITE FOR RESIDUE CL F 3355
11
CC3
SOFTWARE
CYS K:110 , HIS K:112 , HIS K:113 , CYS K:181 , HOH K:3341
BINDING SITE FOR RESIDUE ZN K 3326
12
CC4
SOFTWARE
ARG K:185 , SER L:135 , ARG L:139
BINDING SITE FOR RESIDUE CL L 3356
13
CC5
SOFTWARE
CYS L:110 , HIS L:112 , HIS L:113 , CYS L:181 , HOH L:3342
BINDING SITE FOR RESIDUE ZN L 3327
14
CC6
SOFTWARE
ARG L:185 , SER M:135 , LYS M:136 , ARG M:139
BINDING SITE FOR RESIDUE CL M 3357
15
CC7
SOFTWARE
CYS M:110 , HIS M:112 , HIS M:113 , CYS M:181 , HOH M:3343
BINDING SITE FOR RESIDUE ZN M 3328
16
CC8
SOFTWARE
ARG M:185 , SER N:135 , LYS N:136 , ARG N:139
BINDING SITE FOR RESIDUE CL N 3358
17
CC9
SOFTWARE
CYS N:110 , HIS N:113 , CYS N:181 , HOH N:3344
BINDING SITE FOR RESIDUE ZN N 3329
18
DC1
SOFTWARE
ARG N:185 , SER O:135 , LYS O:136 , ARG O:139
BINDING SITE FOR RESIDUE CL O 3359
19
DC2
SOFTWARE
CYS O:110 , HIS O:112 , HIS O:113 , CYS O:181 , HOH O:3345
BINDING SITE FOR RESIDUE ZN O 3330
20
DC3
SOFTWARE
SER K:135 , ARG K:139 , ARG O:185
BINDING SITE FOR RESIDUE CL K 3360
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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]
PROSITE Patterns/Profiles
(2, 20)
Info
All PROSITE Patterns/Profiles
1: GTP_CYCLOHYDROL_1_1 (F:97-113,G:97-113,H:97-113,I:97-11...)
2: GTP_CYCLOHYDROL_1_2 (F:145-155,G:145-155,H:145-155,I:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GTP_CYCLOHYDROL_1_1
PS00859
GTP cyclohydrolase I signature 1.
GCH1_ECOLI
98-114
10
-
-
-
-
-
F:97-113
G:97-113
H:97-113
I:97-113
J:97-113
K:97-113
L:97-113
M:97-113
N:97-113
O:97-113
2
GTP_CYCLOHYDROL_1_2
PS00860
GTP cyclohydrolase I signature 2.
GCH1_ECOLI
146-156
10
-
-
-
-
-
F:145-155
G:145-155
H:145-155
I:145-155
J:145-155
K:145-155
L:145-155
M:145-155
N:145-155
O:145-155
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 15)
Info
All SCOP Domains
1a: SCOP_d1fbxa_ (A:)
1b: SCOP_d1fbxb_ (B:)
1c: SCOP_d1fbxc_ (C:)
1d: SCOP_d1fbxd_ (D:)
1e: SCOP_d1fbxe_ (E:)
1f: SCOP_d1fbxf_ (F:)
1g: SCOP_d1fbxg_ (G:)
1h: SCOP_d1fbxh_ (H:)
1i: SCOP_d1fbxi_ (I:)
1j: SCOP_d1fbxj_ (J:)
1k: SCOP_d1fbxk_ (K:)
1l: SCOP_d1fbxl_ (L:)
1m: SCOP_d1fbxm_ (M:)
1n: SCOP_d1fbxn_ (N:)
1o: SCOP_d1fbxo_ (O:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
GTP cyclohydrolase I
(15)
Protein domain
:
GTP cyclohydrolase I
(14)
Escherichia coli [TaxId: 562]
(7)
1a
d1fbxa_
A:
1b
d1fbxb_
B:
1c
d1fbxc_
C:
1d
d1fbxd_
D:
1e
d1fbxe_
E:
1f
d1fbxf_
F:
1g
d1fbxg_
G:
1h
d1fbxh_
H:
1i
d1fbxi_
I:
1j
d1fbxj_
J:
1k
d1fbxk_
K:
1l
d1fbxl_
L:
1m
d1fbxm_
M:
1n
d1fbxn_
N:
1o
d1fbxo_
O:
[
close SCOP info
]
CATH Domains
(2, 30)
Info
all CATH domains
1a: CATH_1fbxA02 (A:86-221)
1b: CATH_1fbxB02 (B:86-221)
1c: CATH_1fbxC02 (C:86-221)
1d: CATH_1fbxD02 (D:86-221)
1e: CATH_1fbxE02 (E:86-221)
1f: CATH_1fbxF02 (F:86-221)
1g: CATH_1fbxG02 (G:86-221)
1h: CATH_1fbxH02 (H:86-221)
1i: CATH_1fbxI02 (I:86-221)
1j: CATH_1fbxJ02 (J:86-221)
1k: CATH_1fbxK02 (K:86-221)
1l: CATH_1fbxL02 (L:86-221)
1m: CATH_1fbxM02 (M:86-221)
1n: CATH_1fbxN02 (N:86-221)
1o: CATH_1fbxO02 (O:86-221)
2a: CATH_1fbxA01 (A:1-85)
2b: CATH_1fbxB01 (B:1-85)
2c: CATH_1fbxC01 (C:1-85)
2d: CATH_1fbxD01 (D:1-85)
2e: CATH_1fbxE01 (E:1-85)
2f: CATH_1fbxF01 (F:1-85)
2g: CATH_1fbxG01 (G:1-85)
2h: CATH_1fbxH01 (H:1-85)
2i: CATH_1fbxI01 (I:1-85)
2j: CATH_1fbxJ01 (J:1-85)
2k: CATH_1fbxK01 (K:1-85)
2l: CATH_1fbxL01 (L:1-85)
2m: CATH_1fbxM01 (M:1-85)
2n: CATH_1fbxN01 (N:1-85)
2o: CATH_1fbxO01 (O:1-85)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GTP Cyclohydrolase I, domain 2
(31)
Homologous Superfamily
:
[code=3.30.1130.10, no name defined]
(31)
Escherichia coli. Organism_taxid: 562.
(5)
1a
1fbxA02
A:86-221
1b
1fbxB02
B:86-221
1c
1fbxC02
C:86-221
1d
1fbxD02
D:86-221
1e
1fbxE02
E:86-221
1f
1fbxF02
F:86-221
1g
1fbxG02
G:86-221
1h
1fbxH02
H:86-221
1i
1fbxI02
I:86-221
1j
1fbxJ02
J:86-221
1k
1fbxK02
K:86-221
1l
1fbxL02
L:86-221
1m
1fbxM02
M:86-221
1n
1fbxN02
N:86-221
1o
1fbxO02
O:86-221
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GTP Cyclohydrolase I; Chain A, domain 1
(23)
Homologous Superfamily
:
[code=1.10.286.10, no name defined]
(14)
Escherichia coli. Organism_taxid: 562.
(5)
2a
1fbxA01
A:1-85
2b
1fbxB01
B:1-85
2c
1fbxC01
C:1-85
2d
1fbxD01
D:1-85
2e
1fbxE01
E:1-85
2f
1fbxF01
F:1-85
2g
1fbxG01
G:1-85
2h
1fbxH01
H:1-85
2i
1fbxI01
I:1-85
2j
1fbxJ01
J:1-85
2k
1fbxK01
K:1-85
2l
1fbxL01
L:1-85
2m
1fbxM01
M:1-85
2n
1fbxN01
N:1-85
2o
1fbxO01
O:1-85
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (533 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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