PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1FBX
Biol. Unit 1
Info
Asym.Unit (533 KB)
Biol.Unit 1 (352 KB)
Biol.Unit 2 (350 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF ZINC-CONTAINING E.COLI GTP CYCLOHYDROLASE I
Authors
:
G. Auerbach, A. Herrmann, A. Bracher, A. Bader, M. Gutlich, M. Fischer, M. Neukamm, H. Nar, M. Garrido-Franco, J. Richardson, R. Huber, A. Bacher
Date
:
17 Jul 00 (Deposition) - 14 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1: A,B,C,D,E (2x)
Biol. Unit 2: F,G,H,I,J,K,L,M,N,O (1x)
Keywords
:
Hydrolase, Allosteric Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Auerbach, A. Herrmann, A. Bracher, G. Bader, M. Gutlich, M. Fischer, M. Neukamm, M. Garrido-Franco, J. Richardson, H. Nar, R. Huber, A. Bacher
Zinc Plays A Key Role In Human And Bacterial Gtp Cyclohydrolase I.
Proc. Natl. Acad. Sci. Usa V. 97 13567 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:110 , HIS A:112 , HIS A:113 , CYS A:181 , HOH A:3331
BINDING SITE FOR RESIDUE ZN A 3316
02
AC2
SOFTWARE
ARG A:185 , SER B:135 , LYS B:136 , ARG B:139
BINDING SITE FOR RESIDUE CL B 3346
03
AC3
SOFTWARE
CYS B:110 , HIS B:113 , CYS B:181 , HOH B:3332
BINDING SITE FOR RESIDUE ZN B 3317
04
AC4
SOFTWARE
ARG B:185 , SER C:135 , LYS C:136 , ARG C:139
BINDING SITE FOR RESIDUE CL C 3347
05
AC5
SOFTWARE
CYS C:110 , HIS C:113 , CYS C:181 , HOH C:3333
BINDING SITE FOR RESIDUE ZN C 3318
06
AC6
SOFTWARE
ARG C:185 , SER D:135 , ARG D:139
BINDING SITE FOR RESIDUE CL D 3348
07
AC7
SOFTWARE
CYS D:110 , HIS D:112 , HIS D:113 , CYS D:181 , HOH D:3334
BINDING SITE FOR RESIDUE ZN D 3319
08
AC8
SOFTWARE
ARG D:185 , SER E:135 , LYS E:136 , ARG E:139
BINDING SITE FOR RESIDUE CL E 3349
09
AC9
SOFTWARE
CYS E:110 , HIS E:112 , HIS E:113 , CYS E:181 , HOH E:3335
BINDING SITE FOR RESIDUE ZN E 3320
10
BC1
SOFTWARE
SER A:135 , LYS A:136 , ARG A:139 , ARG E:185
BINDING SITE FOR RESIDUE CL A 3350
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 20)
Info
All PROSITE Patterns/Profiles
1: GTP_CYCLOHYDROL_1_1 (A:97-113,B:97-113,C:97-113,D:97-11...)
2: GTP_CYCLOHYDROL_1_2 (A:145-155,B:145-155,C:145-155,D:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GTP_CYCLOHYDROL_1_1
PS00859
GTP cyclohydrolase I signature 1.
GCH1_ECOLI
98-114
10
A:97-113
B:97-113
C:97-113
D:97-113
E:97-113
-
-
-
-
-
-
-
-
-
-
2
GTP_CYCLOHYDROL_1_2
PS00860
GTP cyclohydrolase I signature 2.
GCH1_ECOLI
146-156
10
A:145-155
B:145-155
C:145-155
D:145-155
E:145-155
-
-
-
-
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 15)
Info
All SCOP Domains
1a: SCOP_d1fbxa_ (A:)
1b: SCOP_d1fbxb_ (B:)
1c: SCOP_d1fbxc_ (C:)
1d: SCOP_d1fbxd_ (D:)
1e: SCOP_d1fbxe_ (E:)
1f: SCOP_d1fbxf_ (F:)
1g: SCOP_d1fbxg_ (G:)
1h: SCOP_d1fbxh_ (H:)
1i: SCOP_d1fbxi_ (I:)
1j: SCOP_d1fbxj_ (J:)
1k: SCOP_d1fbxk_ (K:)
1l: SCOP_d1fbxl_ (L:)
1m: SCOP_d1fbxm_ (M:)
1n: SCOP_d1fbxn_ (N:)
1o: SCOP_d1fbxo_ (O:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
GTP cyclohydrolase I
(15)
Protein domain
:
GTP cyclohydrolase I
(14)
Escherichia coli [TaxId: 562]
(7)
1a
d1fbxa_
A:
1b
d1fbxb_
B:
1c
d1fbxc_
C:
1d
d1fbxd_
D:
1e
d1fbxe_
E:
1f
d1fbxf_
F:
1g
d1fbxg_
G:
1h
d1fbxh_
H:
1i
d1fbxi_
I:
1j
d1fbxj_
J:
1k
d1fbxk_
K:
1l
d1fbxl_
L:
1m
d1fbxm_
M:
1n
d1fbxn_
N:
1o
d1fbxo_
O:
[
close SCOP info
]
CATH Domains
(2, 30)
Info
all CATH domains
1a: CATH_1fbxA02 (A:86-221)
1b: CATH_1fbxB02 (B:86-221)
1c: CATH_1fbxC02 (C:86-221)
1d: CATH_1fbxD02 (D:86-221)
1e: CATH_1fbxE02 (E:86-221)
1f: CATH_1fbxF02 (F:86-221)
1g: CATH_1fbxG02 (G:86-221)
1h: CATH_1fbxH02 (H:86-221)
1i: CATH_1fbxI02 (I:86-221)
1j: CATH_1fbxJ02 (J:86-221)
1k: CATH_1fbxK02 (K:86-221)
1l: CATH_1fbxL02 (L:86-221)
1m: CATH_1fbxM02 (M:86-221)
1n: CATH_1fbxN02 (N:86-221)
1o: CATH_1fbxO02 (O:86-221)
2a: CATH_1fbxA01 (A:1-85)
2b: CATH_1fbxB01 (B:1-85)
2c: CATH_1fbxC01 (C:1-85)
2d: CATH_1fbxD01 (D:1-85)
2e: CATH_1fbxE01 (E:1-85)
2f: CATH_1fbxF01 (F:1-85)
2g: CATH_1fbxG01 (G:1-85)
2h: CATH_1fbxH01 (H:1-85)
2i: CATH_1fbxI01 (I:1-85)
2j: CATH_1fbxJ01 (J:1-85)
2k: CATH_1fbxK01 (K:1-85)
2l: CATH_1fbxL01 (L:1-85)
2m: CATH_1fbxM01 (M:1-85)
2n: CATH_1fbxN01 (N:1-85)
2o: CATH_1fbxO01 (O:1-85)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GTP Cyclohydrolase I, domain 2
(31)
Homologous Superfamily
:
[code=3.30.1130.10, no name defined]
(31)
Escherichia coli. Organism_taxid: 562.
(5)
1a
1fbxA02
A:86-221
1b
1fbxB02
B:86-221
1c
1fbxC02
C:86-221
1d
1fbxD02
D:86-221
1e
1fbxE02
E:86-221
1f
1fbxF02
F:86-221
1g
1fbxG02
G:86-221
1h
1fbxH02
H:86-221
1i
1fbxI02
I:86-221
1j
1fbxJ02
J:86-221
1k
1fbxK02
K:86-221
1l
1fbxL02
L:86-221
1m
1fbxM02
M:86-221
1n
1fbxN02
N:86-221
1o
1fbxO02
O:86-221
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GTP Cyclohydrolase I; Chain A, domain 1
(23)
Homologous Superfamily
:
[code=1.10.286.10, no name defined]
(14)
Escherichia coli. Organism_taxid: 562.
(5)
2a
1fbxA01
A:1-85
2b
1fbxB01
B:1-85
2c
1fbxC01
C:1-85
2d
1fbxD01
D:1-85
2e
1fbxE01
E:1-85
2f
1fbxF01
F:1-85
2g
1fbxG01
G:1-85
2h
1fbxH01
H:1-85
2i
1fbxI01
I:1-85
2j
1fbxJ01
J:1-85
2k
1fbxK01
K:1-85
2l
1fbxL01
L:1-85
2m
1fbxM01
M:1-85
2n
1fbxN01
N:1-85
2o
1fbxO01
O:1-85
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (533 KB)
Header - Asym.Unit
Biol.Unit 1 (352 KB)
Header - Biol.Unit 1
Biol.Unit 2 (350 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1FBX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help