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1FA9
Biol. Unit 1
Info
Asym.Unit (150 KB)
Biol.Unit 1 (284 KB)
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(1)
Title
:
HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH AMP
Authors
:
V. L. Rath, M. Ammirati, P. K. Lemotte, K. F. Fennell, M. N. Mansour, D. E. T. R. Hynes, G. K. Schulte, D. J. Wasilko, J. Pandit
Date
:
12 Jul 00 (Deposition) - 25 Aug 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Protein-Ligand Complex, Allosteric Protein, Phosphorylated Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. L. Rath, M. Ammirati, P. K. Lemotte, K. F. Fennell, M. N. Mansour, D. E. Danley, T. R. Hynes, G. K. Schulte, D. J. Wasilko, J. Pandit
Activation Of Human Liver Glycogen Phosphorylase By Alteration Of The Secondary Structure And Packing Of The Catalytic Core.
Mol. Cell V. 6 139 2000
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
2a: ALPHA-D-GLUCOSE (GLCa)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
4a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
4
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:135 , LEU A:136 , HIS A:377 , ASN A:484 , SER A:674 , GLY A:675 , THR A:676 , PLP A:999 , HOH A:2090 , HOH A:2192
BINDING SITE FOR RESIDUE GLC A 998
2
AC2
SOFTWARE
ASP A:42 , ASN A:44 , TRP A:67 , GLN A:71 , TYR A:75 , ARG A:309 , ARG A:310 , HOH A:2099 , HOH A:2162
BINDING SITE FOR RESIDUE AMP A 997
3
AC3
SOFTWARE
GLY A:135 , TRP A:491 , TYR A:648 , ARG A:649 , VAL A:650 , THR A:676 , GLY A:677 , LYS A:680 , GLC A:998 , HOH A:2191 , HOH A:2193
BINDING SITE FOR RESIDUE PLP A 999
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SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_007907 (V221I, chain A, )
2: VAR_013095 (V230E, chain A, )
3: VAR_007908 (N338S, chain A, )
4: VAR_007909 (N376K, chain A, )
5: VAR_034425 (R424P, chain A, )
6: VAR_034426 (V697G, chain A, )
7: VAR_013096 (R714S, chain A, )
8: VAR_034427 (I805L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_007907
V
222
I
PYGL_HUMAN
Polymorphism
946616
A
V
221
I
2
UniProt
VAR_013095
V
231
E
PYGL_HUMAN
Polymorphism
1042195
A
V
230
E
3
UniProt
VAR_007908
N
339
S
PYGL_HUMAN
Disease (GSD6)
---
A
N
338
S
4
UniProt
VAR_007909
N
377
K
PYGL_HUMAN
Disease (GSD6)
---
A
N
376
K
5
UniProt
VAR_034425
R
425
P
PYGL_HUMAN
Polymorphism
2228499
A
R
424
P
6
UniProt
VAR_034426
V
698
G
PYGL_HUMAN
Polymorphism
35831273
A
V
697
G
7
UniProt
VAR_013096
R
715
S
PYGL_HUMAN
Polymorphism
1042210
A
R
714
S
8
UniProt
VAR_034427
I
806
L
PYGL_HUMAN
Polymorphism
34313873
A
I
805
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PHOSPHORYLASE (A:672-684)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHORYLASE
PS00102
Phosphorylase pyridoxal-phosphate attachment site.
PYGL_HUMAN
673-685
2
A:672-684
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1fa9a_ (A:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
Oligosaccharide phosphorylase
(199)
Protein domain
:
Glycogen phosphorylase
(86)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1fa9a_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1fa9A02 (A:486-812)
1b: CATH_1fa9A01 (A:10-485,A:813-836)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glycogen Phosphorylase B;
(202)
Human (Homo sapiens)
(16)
1a
1fa9A02
A:486-812
1b
1fa9A01
A:10-485,A:813-836
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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