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1F8V
Biol. Unit 1
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Asym.Unit (189 KB)
Biol.Unit 1, α-C (10.1 MB)
Biol.Unit 1 (10.1 MB)
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(1)
Title
:
THE STRUCTURE OF PARIACOTO VIRUS REVEALS A DODECAHEDRAL CAGE OF DUPLEX RNA
Authors
:
L. Tang, K. N. Johnson, L. A. Ball, T. Lin, M. Yeager, J. E. Johnson
Date
:
05 Jul 00 (Deposition) - 06 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,R
Biol. Unit 1: A,B,C,D,E,F,R (60x)
Keywords
:
Nodavirus, Coat Protein, Nucleoprotein, Protein-Rna Interactions, Rna Duplex, Rna Cage, Gamma Polypeptide, Beta- Sandwich, Icosahedral Virus, Virus/Rna Complex
(Keyword Search:
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Reference
:
L. Tang, K. N. Johnson, L. A. Ball, T. Lin, M. Yeager, J. E. Johnson
The Structure Of Pariacoto Virus Reveals A Dodecahedral Cage Of Duplex Rna.
Nat. Struct. Biol. V. 8 77 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 60)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
SO4
60
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:249 , ASP B:249 , ASP C:249 , MET D:401
BINDING SITE FOR RESIDUE SO4 C 500
2
AC2
SOFTWARE
ASP A:249 , GLU A:251 , ASP B:249 , ASP C:249 , GLU C:251
BINDING SITE FOR RESIDUE CA A 501
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1f8v_1 (A:,D:)
1b: SCOP_d1f8v_2 (B:,E:)
1c: SCOP_d1f8v_3 (C:,F:)
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Nodaviridae-like VP
(3)
Protein domain
:
Alphanodavirus capsid protein
(3)
Pariacoto virus [TaxId: 103782]
(1)
1a
d1f8v.1
A:,D:
1b
d1f8v.2
B:,E:
1c
d1f8v.3
C:,F:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1f8vE00 (E:362-383)
1b: CATH_1f8vF00 (F:362-383)
1c: CATH_1f8vD00 (D:362-401)
2a: CATH_1f8vC00 (C:51-361)
2b: CATH_1f8vB00 (B:49-361)
2c: CATH_1f8vA00 (A:7-361)
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Organisms
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.280, no name defined]
(1)
Pariacato virus. Organism_taxid: 103782. Pariacato virus. Organism_taxid: 103782.
(1)
1a
1f8vE00
E:362-383
1b
1f8vF00
F:362-383
1c
1f8vD00
D:362-401
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Pariacato virus. Organism_taxid: 103782. Pariacato virus. Organism_taxid: 103782.
(1)
2a
1f8vC00
C:51-361
2b
1f8vB00
B:49-361
2c
1f8vA00
A:7-361
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Chain R
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Asym.Unit (189 KB)
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Biol.Unit 1 (10.1 MB)
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