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Getting 'Exon' information from database.
1F8U
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (193 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MUTANT E202Q OF HUMAN ACETYLCHOLINESTERASE COMPLEXED WITH GREEN MAMBA VENOM PEPTIDE FASCICULIN-II
Authors
:
G. Kryger, M. Harel, A. Shafferman, I. Silman, J. L. Sussman
Date
:
05 Jul 00 (Deposition) - 17 Jan 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Serine Esterase, Human Acetylcholinesterase, Hydrolase, Snake Toxin, Hydrolase/Hydrolase Inhibitor, Hydrolase-Toxin Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Kryger, M. Harel, K. Giles, L. Toker, B. Velan, A. Lazar, C. Kronman, D. Barak, N. Ariel, A. Shafferman, I. Silman, J. L. Sussman
Structures Of Recombinant Native And E202Q Mutant Human Acetylcholinesterase Complexed With The Snake-Venom Toxin Fasciculin-Ii.
Acta Crystallogr. , Sect. D V. 56 1385 2000
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:347 , ASN A:350 , NAG A:3003
BINDING SITE FOR RESIDUE NAG A 3002
2
AC2
SOFTWARE
GLY A:345 , NAG A:3002
BINDING SITE FOR RESIDUE NAG A 3003
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021326 (P104A, chain A, )
2: VAR_011934 (V302E, chain A, )
3: VAR_002359 (H322N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021326
P
135
A
ACES_HUMAN
Polymorphism
17885778
A
P
104
A
2
UniProt
VAR_011934
V
333
E
ACES_HUMAN
Polymorphism
8286
A
V
302
E
3
UniProt
VAR_002359
H
353
N
ACES_HUMAN
Polymorphism
1799805
A
H
322
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: SNAKE_TOXIN (B:38-56,B:38-56)
2: CARBOXYLESTERASE_B_2 (A:94-104)
3: CARBOXYLESTERASE_B_1 (A:190-205)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SNAKE_TOXIN
PS00272
Snake toxins signature.
3SE1_DENAN
38-56
1
B:38-56
3SE2_DENAN
38-56
1
B:38-56
2
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
ACES_HUMAN
125-135
1
A:94-104
3
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
ACES_HUMAN
221-236
1
A:190-205
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Exons
(3, 3)
Info
All Exons
Exon 1.5e (A:5-325 (gaps))
Exon 1.6c (A:326-487)
Exon 1.7a (A:487-543 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.4b/1.5e
2: Boundary 1.5e/1.6c
3: Boundary 1.6c/1.7a
4: Boundary 1.7a/1.9h
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4b
ENST00000241069
4b
ENSE00001873556
chr7:
100493509-100493423
87
ACES_HUMAN
-
0
0
-
-
1.5e
ENST00000241069
5e
ENSE00001741634
chr7:
100491873-100490786
1088
ACES_HUMAN
1-356
356
1
A:5-325 (gaps)
321
1.6c
ENST00000241069
6c
ENSE00001609117
chr7:
100490439-100489955
485
ACES_HUMAN
357-518
162
1
A:326-487
162
1.7a
ENST00000241069
7a
ENSE00001762084
chr7:
100488959-100488790
170
ACES_HUMAN
518-575
58
1
A:487-543 (gaps)
57
1.9h
ENST00000241069
9h
ENSE00001639836
chr7:
100487956-100487615
342
ACES_HUMAN
575-614
40
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1f8ua_ (A:)
2a: SCOP_d1f8ub_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
Acetylcholinesterase
(107)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1f8ua_
A:
Class
:
Small proteins
(3458)
Fold
:
Snake toxin-like
(152)
Superfamily
:
Snake toxin-like
(152)
Family
:
Snake venom toxins
(107)
Protein domain
:
Fasciculin
(11)
Green mamba (Dendroaspis angusticeps) [TaxId: 8618]
(11)
2a
d1f8ub_
B:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1f8uA00 (A:5-543)
2a: CATH_1f8uB00 (B:1-61)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
1f8uA00
A:5-543
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
CD59
(129)
Homologous Superfamily
:
CD59
(129)
Human (Homo sapiens)
(26)
2a
1f8uB00
B:1-61
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (103 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (193 KB)
Header - Biol.Unit 2
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