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1F8R
Asym. Unit
Info
Asym.Unit (365 KB)
Biol.Unit 1 (181 KB)
Biol.Unit 2 (182 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF L-AMINO ACID OXIDASE FROM CALLOSELASMA RHODOSTOMA COMPLEXED WITH CITRATE
Authors
:
P. D. Pawelek, J. Cheah, R. Coulombe, P. Macheroux, S. Ghisla, A. Vrieli
Date
:
04 Jul 00 (Deposition) - 24 Aug 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Flavoenzyme, Oxidase, Enantiomeric Specificity, Active Site Funnel, Helical Domain, Fad-Binding Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. D. Pawelek, J. Cheah, R. Coulombe, P. Macheroux, S. Ghisla, A. Vrielink
The Structure Of L-Amino Acid Oxidase Reveals The Substrate Trajectory Into An Enantiomerically Conserved Active Site.
Embo J. V. 19 4204 2000
[
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
4
Ligand/Ion
CITRIC ACID
2
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
4
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:171 , ASN A:172 , TYR A:175 , NAG A:524 , FUC A:525 , HOH A:1762 , HOH A:1851
BINDING SITE FOR RESIDUE NAG A 523
02
AC2
SOFTWARE
NAG A:523
BINDING SITE FOR RESIDUE NAG A 524
03
AC3
SOFTWARE
ARG A:170 , NAG A:523 , HOH A:1851
BINDING SITE FOR RESIDUE FUC A 525
04
AC4
SOFTWARE
GLU A:337 , HIS A:342 , ASN A:361
BINDING SITE FOR RESIDUE NAG A 522
05
AC5
SOFTWARE
ASN B:172 , TYR B:175 , NAG B:524 , FUC B:525
BINDING SITE FOR RESIDUE NAG B 523
06
AC6
SOFTWARE
NAG B:523 , FUC B:525
BINDING SITE FOR RESIDUE NAG B 524
07
AC7
SOFTWARE
ARG B:170 , THR B:171 , NAG B:523 , NAG B:524
BINDING SITE FOR RESIDUE FUC B 525
08
AC8
SOFTWARE
ASN B:110 , ASN B:359 , ASN B:361 , HOH B:758 , HOH B:1840 , HOH B:2029
BINDING SITE FOR RESIDUE NAG B 522
09
AC9
SOFTWARE
ASN C:172 , NAG C:524 , FUC C:525 , GLU D:21 , HOH D:2343
BINDING SITE FOR RESIDUE NAG C 523
10
BC1
SOFTWARE
NAG C:523
BINDING SITE FOR RESIDUE NAG C 524
11
BC2
SOFTWARE
NAG C:523 , GLU D:21 , ARG D:24 , ASN D:25 , HOH D:2343
BINDING SITE FOR RESIDUE FUC C 525
12
BC3
SOFTWARE
ASN C:359 , ASN C:361
BINDING SITE FOR RESIDUE NAG C 522
13
BC4
SOFTWARE
GLU C:21 , HOH C:1038 , HOH C:1193 , ASN D:172 , NAG D:524 , FUC D:525
BINDING SITE FOR RESIDUE NAG D 523
14
BC5
SOFTWARE
NAG D:523
BINDING SITE FOR RESIDUE NAG D 524
15
BC6
SOFTWARE
ASN C:25 , HOH C:1193 , ARG D:170 , NAG D:523 , HOH D:1569
BINDING SITE FOR RESIDUE FUC D 525
16
BC7
SOFTWARE
ASN D:359 , HIS D:360 , ASN D:361 , HOH D:971
BINDING SITE FOR RESIDUE NAG D 522
17
BC8
SOFTWARE
ARG A:90 , ASN A:208 , HIS A:223 , PHE A:227 , ARG A:322 , TYR A:356 , TYR A:372 , HOH A:642 , HOH A:1236 , HOH A:1529 , HOH A:1600 , HOH A:1726 , HOH A:1872
BINDING SITE FOR RESIDUE CIT A 526
18
BC9
SOFTWARE
VAL A:39 , GLY A:40 , GLY A:42 , MET A:43 , ALA A:44 , LEU A:62 , GLU A:63 , ALA A:64 , GLY A:70 , ARG A:71 , VAL A:72 , GLY A:87 , PRO A:88 , MET A:89 , ARG A:90 , LEU A:91 , ALA A:259 , GLN A:260 , VAL A:261 , CYS A:293 , THR A:294 , THR A:295 , TYR A:372 , TRP A:420 , TYR A:425 , ILE A:430 , GLY A:456 , GLU A:457 , GLY A:464 , TRP A:465 , ILE A:466 , THR A:469 , HOH A:533 , HOH A:536 , HOH A:557 , HOH A:559 , HOH A:585 , HOH A:594 , HOH A:600 , HOH A:602 , HOH A:997 , HOH A:1000 , HOH A:1600
BINDING SITE FOR RESIDUE FAD A 527
19
CC1
SOFTWARE
ARG B:90 , ASN B:208 , HIS B:223 , PHE B:227 , ARG B:322 , TYR B:372 , HOH B:760 , HOH B:1093 , HOH B:1449 , HOH B:1679 , HOH B:2090
BINDING SITE FOR RESIDUE CIT B 526
20
CC2
SOFTWARE
VAL B:39 , GLY B:40 , GLY B:42 , MET B:43 , ALA B:44 , LEU B:62 , GLU B:63 , ALA B:64 , GLY B:70 , ARG B:71 , VAL B:72 , GLY B:87 , PRO B:88 , MET B:89 , ARG B:90 , LEU B:91 , ALA B:259 , GLN B:260 , VAL B:261 , CYS B:293 , THR B:294 , THR B:295 , TYR B:372 , TRP B:420 , TYR B:425 , GLY B:429 , ILE B:430 , GLY B:456 , GLU B:457 , GLY B:464 , TRP B:465 , ILE B:466 , THR B:469 , HOH B:650 , HOH B:653 , HOH B:674 , HOH B:676 , HOH B:703 , HOH B:712 , HOH B:718 , HOH B:982 , HOH B:989 , HOH B:1679
BINDING SITE FOR RESIDUE FAD B 527
21
CC3
SOFTWARE
ARG C:90 , ASN C:208 , HIS C:223 , PHE C:227 , ARG C:322 , TYR C:356 , TYR C:372 , FAD C:527 , HOH C:868 , HOH C:1272 , HOH C:1439 , HOH C:1594 , HOH C:1641 , HOH C:2015 , HOH C:2223
BINDING SITE FOR RESIDUE CIT C 526
22
CC4
SOFTWARE
VAL C:39 , GLY C:40 , GLY C:42 , MET C:43 , ALA C:44 , LEU C:62 , GLU C:63 , ALA C:64 , GLY C:70 , ARG C:71 , VAL C:72 , GLY C:87 , PRO C:88 , MET C:89 , ARG C:90 , LEU C:91 , ALA C:259 , GLN C:260 , VAL C:261 , CYS C:293 , THR C:294 , THR C:295 , TYR C:372 , TRP C:420 , TYR C:425 , GLY C:429 , ILE C:430 , GLY C:456 , GLU C:457 , GLY C:464 , TRP C:465 , ILE C:466 , THR C:469 , CIT C:526 , HOH C:768 , HOH C:771 , HOH C:791 , HOH C:793 , HOH C:815 , HOH C:824 , HOH C:830 , HOH C:832 , HOH C:981 , HOH C:1008 , HOH C:1641
BINDING SITE FOR RESIDUE FAD C 527
23
CC5
SOFTWARE
ARG D:90 , ASN D:208 , HIS D:223 , PHE D:227 , ARG D:322 , TYR D:372 , ILE D:430 , FAD D:527 , HOH D:973 , HOH D:1116 , HOH D:1195 , HOH D:1717 , HOH D:2027
BINDING SITE FOR RESIDUE CIT D 526
24
CC6
SOFTWARE
VAL D:39 , GLY D:40 , GLY D:42 , MET D:43 , ALA D:44 , LEU D:62 , GLU D:63 , ALA D:64 , GLY D:70 , ARG D:71 , VAL D:72 , GLY D:87 , PRO D:88 , MET D:89 , ARG D:90 , LEU D:91 , ALA D:259 , GLN D:260 , VAL D:261 , CYS D:293 , THR D:294 , THR D:295 , TYR D:372 , TRP D:420 , TYR D:425 , ILE D:430 , GLY D:456 , GLU D:457 , GLY D:464 , TRP D:465 , ILE D:466 , THR D:469 , CIT D:526 , HOH D:875 , HOH D:878 , HOH D:898 , HOH D:900 , HOH D:922 , HOH D:929 , HOH D:935 , HOH D:937 , HOH D:994 , HOH D:999 , HOH D:2027
BINDING SITE FOR RESIDUE FAD D 527
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1f8ra2 (A:320-432)
1b: SCOP_d1f8rb2 (B:320-432)
1c: SCOP_d1f8rc2 (C:320-432)
1d: SCOP_d1f8rd2 (D:320-432)
2a: SCOP_d1f8ra1 (A:4-319,A:433-486)
2b: SCOP_d1f8rb1 (B:4-319,B:433-486)
2c: SCOP_d1f8rc1 (C:4-319,C:433-486)
2d: SCOP_d1f8rd1 (D:4-319,D:433-486)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
L-aminoacid/polyamine oxidase
(66)
Protein domain
:
L-aminoacid oxidase
(7)
Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
(3)
1a
d1f8ra2
A:320-432
1b
d1f8rb2
B:320-432
1c
d1f8rc2
C:320-432
1d
d1f8rd2
D:320-432
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
L-aminoacid oxidase
(7)
Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
(3)
2a
d1f8ra1
A:4-319,A:433-486
2b
d1f8rb1
B:4-319,B:433-486
2c
d1f8rc1
C:4-319,C:433-486
2d
d1f8rd1
D:4-319,D:433-486
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1f8rA02 (A:35-64,A:242-318,A:446-486)
1b: CATH_1f8rB02 (B:35-64,B:242-318,B:446-486)
1c: CATH_1f8rC02 (C:35-64,C:242-318,C:446-486)
1d: CATH_1f8rD02 (D:35-64,D:242-318,D:446-486)
2a: CATH_1f8rA01 (A:4-25,A:73-129,A:233-236,A:324-420)
2b: CATH_1f8rB01 (B:4-25,B:73-129,B:233-236,B:324-420)
2c: CATH_1f8rC01 (C:4-25,C:73-129,C:233-236,C:324-420)
2d: CATH_1f8rD01 (D:4-25,D:73-129,D:233-236,D:324-420)
3a: CATH_1f8rA03 (A:130-230)
3b: CATH_1f8rB03 (B:130-230)
3c: CATH_1f8rC03 (C:130-230)
3d: CATH_1f8rD03 (D:130-230)
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Malayan pit viper (Calloselasma rhodostoma)
(3)
1a
1f8rA02
A:35-64,A:242-318,A:446-486
1b
1f8rB02
B:35-64,B:242-318,B:446-486
1c
1f8rC02
C:35-64,C:242-318,C:446-486
1d
1f8rD02
D:35-64,D:242-318,D:446-486
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Polyamine Oxidase; Chain A, domain 2
(62)
Homologous Superfamily
:
[code=3.90.660.10, no name defined]
(61)
Malayan pit viper (Calloselasma rhodostoma)
(3)
2a
1f8rA01
A:4-25,A:73-129,A:233-236,A:324-420
2b
1f8rB01
B:4-25,B:73-129,B:233-236,B:324-420
2c
1f8rC01
C:4-25,C:73-129,C:233-236,C:324-420
2d
1f8rD01
D:4-25,D:73-129,D:233-236,D:324-420
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Guanine Nucleotide Dissociation Inhibitor; domain 1
(50)
Homologous Superfamily
:
Guanine Nucleotide Dissociation Inhibitor, domain 1
(50)
Malayan pit viper (Calloselasma rhodostoma)
(3)
3a
1f8rA03
A:130-230
3b
1f8rB03
B:130-230
3c
1f8rC03
C:130-230
3d
1f8rD03
D:130-230
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (365 KB)
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