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1F76
Asym. Unit
Info
Asym.Unit (244 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (64 KB)
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(1)
Title
:
ESCHERICHIA COLI DIHYDROOROTATE DEHYDROGENASE
Authors
:
S. Norager, K. F. Jensen, O. Bjornberg, S. Larsen
Date
:
26 Jun 00 (Deposition) - 16 Oct 02 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: D (1x)
Biol. Unit 4: E (1x)
Keywords
:
Monomer, Alpha-Beta-Barrel, Fmn Binding Domain, Orotate Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Norager, K. F. Jensen, O. Bjornberg, S. Larsen
E. Coli Dihydroorotate Dehydrogenase Reveals Structural And Functional Distinction Between Different Classes Of Dihydroorotate Dehydrogenases
Structure V. 10 1211 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 43)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
1d: FLAVIN MONONUCLEOTIDE (FMNd)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: OROTIC ACID (OROa)
4b: OROTIC ACID (OROb)
4c: OROTIC ACID (OROc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
4
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
FMT
8
Ligand/Ion
FORMIC ACID
3
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
4
ORO
3
Ligand/Ion
OROTIC ACID
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:61 , ALA A:62 , GLY A:63 , LYS A:66 , THR A:86 , ASN A:111 , ASN A:139 , ASN A:172 , LYS A:217 , THR A:245 , THR A:247 , SER A:267 , GLY A:268 , LEU A:271 , VAL A:295 , GLY A:296 , GLY A:297 , TYR A:318 , SER A:319 , ORO A:1338 , HOH A:1352 , HOH A:1404 , HOH A:1675
BINDING SITE FOR RESIDUE FMN A 1337
02
AC2
SOFTWARE
LYS A:66 , ASN A:111 , MSE A:113 , GLY A:114 , PHE A:115 , ASN A:172 , SER A:175 , ASN A:177 , ASN A:246 , THR A:247 , FMN A:1337
BINDING SITE FOR RESIDUE ORO A 1338
03
AC3
SOFTWARE
MSE A:1 , LEU A:37 , VAL A:38 , ARG A:39 , GLN A:40 , PRO A:326 , HOH A:1517 , HOH A:1528 , HOH A:1677
BINDING SITE FOR RESIDUE ORO A 1339
04
AC4
SOFTWARE
ALA B:61 , ALA B:62 , GLY B:63 , LYS B:66 , THR B:86 , ASN B:111 , ASN B:139 , ASN B:172 , LYS B:217 , THR B:245 , ASN B:246 , THR B:247 , SER B:267 , GLY B:268 , VAL B:295 , GLY B:296 , GLY B:297 , TYR B:318 , SER B:319 , FMT B:1439 , FMT B:1440 , HOH B:1441 , HOH B:1463
BINDING SITE FOR RESIDUE FMN B 1437
05
AC5
SOFTWARE
ALA D:61 , ALA D:62 , GLY D:63 , LYS D:66 , THR D:86 , ASN D:111 , ASN D:139 , ASN D:172 , LYS D:217 , THR D:245 , ASN D:246 , THR D:247 , SER D:267 , GLY D:268 , VAL D:295 , GLY D:296 , GLY D:297 , TYR D:318 , SER D:319 , FMT D:1538 , FMT D:1539 , HOH D:1542 , HOH D:1561 , HOH D:1564
BINDING SITE FOR RESIDUE FMN D 1537
06
AC6
SOFTWARE
MSE D:1 , LEU D:37 , VAL D:38 , GLN D:40 , PRO D:326 , HOH D:1617
BINDING SITE FOR RESIDUE ORO D 1540
07
AC7
SOFTWARE
ALA E:61 , ALA E:62 , GLY E:63 , LYS E:66 , THR E:86 , LEU E:100 , ASN E:111 , ASN E:139 , ASN E:172 , LYS E:217 , THR E:245 , ASN E:246 , THR E:247 , SER E:267 , GLY E:268 , LEU E:271 , VAL E:295 , GLY E:296 , GLY E:297 , TYR E:318 , SER E:319 , FMT E:1638 , FMT E:1640 , HOH E:1641 , HOH E:1653 , HOH E:1693
BINDING SITE FOR RESIDUE FMN E 1637
08
AC8
SOFTWARE
ASN B:111 , ASN B:177 , ASN B:246 , THR B:247 , FMT B:1439 , FMT B:1440
BINDING SITE FOR RESIDUE FMT B 1438
09
AC9
SOFTWARE
PHE B:115 , ASN B:172 , SER B:175 , ASN B:246 , FMN B:1437 , FMT B:1438 , FMT B:1440
BINDING SITE FOR RESIDUE FMT B 1439
10
BC1
SOFTWARE
LYS B:66 , MSE B:113 , GLY B:114 , PHE B:115 , SER B:175 , ASN B:177 , FMN B:1437 , FMT B:1438 , FMT B:1439
BINDING SITE FOR RESIDUE FMT B 1440
11
BC2
SOFTWARE
ASN D:172 , SER D:175 , ASN D:246 , FMN D:1537 , FMT D:1539
BINDING SITE FOR RESIDUE FMT D 1538
12
BC3
SOFTWARE
LYS D:66 , MSE D:113 , GLY D:114 , PHE D:115 , SER D:175 , ASN D:177 , FMN D:1537 , FMT D:1538 , HOH D:1557
BINDING SITE FOR RESIDUE FMT D 1539
13
BC4
SOFTWARE
LYS E:66 , MSE E:113 , GLY E:114 , PHE E:115 , ASN E:177 , FMN E:1637 , FMT E:1639 , FMT E:1640
BINDING SITE FOR RESIDUE FMT E 1638
14
BC5
SOFTWARE
ASN E:111 , ASN E:177 , THR E:247 , GLY E:265 , FMT E:1638 , FMT E:1640
BINDING SITE FOR RESIDUE FMT E 1639
15
BC6
SOFTWARE
ASN E:172 , SER E:175 , PRO E:176 , ASN E:246 , FMN E:1637 , FMT E:1638 , FMT E:1639
BINDING SITE FOR RESIDUE FMT E 1640
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: DHODEHASE_1 (A:80-99,B:80-99,D:80-99,E:80-99)
2: DHODEHASE_2 (A:292-312,B:292-312,D:292-312,E:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DHODEHASE_1
PS00911
Dihydroorotate dehydrogenase signature 1.
PYRD_ECOLI
80-99
4
A:80-99
B:80-99
D:80-99
E:80-99
2
DHODEHASE_2
PS00912
Dihydroorotate dehydrogenase signature 2.
PYRD_ECOLI
292-312
4
A:292-312
B:292-312
D:292-312
E:292-312
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1f76a_ (A:)
1b: SCOP_d1f76b_ (B:)
1c: SCOP_d1f76d_ (D:)
1d: SCOP_d1f76e_ (E:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Escherichia coli [TaxId: 562]
(1)
1a
d1f76a_
A:
1b
d1f76b_
B:
1c
d1f76d_
D:
1d
d1f76e_
E:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1f76A00 (A:2-336)
1b: CATH_1f76B00 (B:2-336)
1c: CATH_1f76D00 (D:2-336)
1d: CATH_1f76E00 (E:2-336)
View:
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Eubacteria (Bacteria)
(1)
1a
1f76A00
A:2-336
1b
1f76B00
B:2-336
1c
1f76D00
D:2-336
1d
1f76E00
E:2-336
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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