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1F6D
Asym. Unit
Info
Asym.Unit (266 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (129 KB)
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(1)
Title
:
THE STRUCTURE OF UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE FROM E. COLI.
Authors
:
R. E. Campbell, S. C. Mosimann, M. E. Tanner, N. C. J. Strynadka
Date
:
21 Jun 00 (Deposition) - 13 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Sugar-Nucleotide Epimerase, Rossmann Fold, Two Domains, Glycogen Phosphorylase Superfamily, Udp, Dimer, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. E. Campbell, S. C. Mosimann, M. E. Tanner, N. C. Strynadka
The Structure Of Udp-N-Acetylglucosamine 2-Epimerase Reveals Homology To Phosphoglycosyl Transferases.
Biochemistry V. 39 14993 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 50)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: URIDINE-5'-DIPHOSPHATE (UDPa)
4b: URIDINE-5'-DIPHOSPHATE (UDPb)
4c: URIDINE-5'-DIPHOSPHATE (UDPc)
4d: URIDINE-5'-DIPHOSPHATE (UDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MSE
38
Mod. Amino Acid
SELENOMETHIONINE
3
NA
4
Ligand/Ion
SODIUM ION
4
UDP
4
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:298 , SER A:350 , ALA A:352 , HOH A:1389 , HOH A:1412
BINDING SITE FOR RESIDUE NA A 1378
02
AC2
SOFTWARE
HIS A:353 , ASN A:354 , HOH A:1384
BINDING SITE FOR RESIDUE CL A 1379
03
AC3
SOFTWARE
PRO B:298 , SER B:350 , ALA B:352 , HOH B:2402 , HOH B:2487
BINDING SITE FOR RESIDUE NA B 2378
04
AC4
SOFTWARE
GLY B:119 , ARG B:121 , ARG B:135
BINDING SITE FOR RESIDUE CL B 2379
05
AC5
SOFTWARE
PRO C:298 , MSE C:349 , SER C:350 , ALA C:352
BINDING SITE FOR RESIDUE NA C 3378
06
AC6
SOFTWARE
GLY C:119 , ARG C:121 , ARG C:135 , HOH C:3388
BINDING SITE FOR RESIDUE CL C 3379
07
AC7
SOFTWARE
PRO D:298 , GLY D:301 , SER D:350 , ALA D:352 , HOH D:4386 , HOH D:4418
BINDING SITE FOR RESIDUE NA D 4378
08
AC8
SOFTWARE
ASN D:354 , HOH D:4383
BINDING SITE FOR RESIDUE CL D 4379
09
AC9
SOFTWARE
ARG A:10 , ILE A:14 , GLN A:271 , TYR A:273 , PHE A:276 , GLY A:292 , GLU A:296 , HOH A:1567
BINDING SITE FOR RESIDUE UDP A 1377
10
BC1
SOFTWARE
ARG B:10 , PRO B:11 , ILE B:14 , HIS B:213 , GLN B:271 , TYR B:273 , PHE B:276 , SER B:290 , GLY B:291 , GLY B:292 , GLU B:296 , HOH B:2385 , HOH B:2435 , HOH B:2455 , HOH B:2483 , HOH B:2532
BINDING SITE FOR RESIDUE UDP B 2377
11
BC2
SOFTWARE
ARG C:10 , PRO C:11 , ILE C:14 , HIS C:213 , GLN C:271 , TYR C:273 , PHE C:276 , SER C:290 , GLY C:291 , GLY C:292 , GLU C:296 , HOH C:3387 , HOH C:3497
BINDING SITE FOR RESIDUE UDP C 3377
12
BC3
SOFTWARE
ARG D:10 , ILE D:14 , GLN D:271 , TYR D:273 , PHE D:276 , GLY D:292 , GLU D:296
BINDING SITE FOR RESIDUE UDP D 4377
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1f6da_ (A:)
1b: SCOP_d1f6db_ (B:)
1c: SCOP_d1f6dc_ (C:)
1d: SCOP_d1f6dd_ (D:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
UDP-N-acetylglucosamine 2-epimerase
(7)
Protein domain
:
UDP-N-acetylglucosamine 2-epimerase
(4)
Escherichia coli [TaxId: 562]
(2)
1a
d1f6da_
A:
1b
d1f6db_
B:
1c
d1f6dc_
C:
1d
d1f6dd_
D:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1f6dA02 (A:2-186,A:357-376)
1b: CATH_1f6dD02 (D:2-186,D:357-365)
1c: CATH_1f6dB02 (B:2-186,B:357-367)
1d: CATH_1f6dC02 (C:2-186,C:357-363)
1e: CATH_1f6dA01 (A:187-356)
1f: CATH_1f6dB01 (B:187-356)
1g: CATH_1f6dD01 (D:187-356)
1h: CATH_1f6dC01 (C:187-356)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glycogen Phosphorylase B;
(202)
Escherichia coli. Organism_taxid: 562.
(7)
1a
1f6dA02
A:2-186,A:357-376
1b
1f6dD02
D:2-186,D:357-365
1c
1f6dB02
B:2-186,B:357-367
1d
1f6dC02
C:2-186,C:357-363
1e
1f6dA01
A:187-356
1f
1f6dB01
B:187-356
1g
1f6dD01
D:187-356
1h
1f6dC01
C:187-356
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (266 KB)
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