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1F67
Theor. Model
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Theoretical Model (69 KB)
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(1)
Title
:
MOLECULAR MODELING OF HUMAN TYPE 10 17BETA-HYDROXYSTEROID DEHYDROGENASE
Authors
:
E. Nordling, U. C. Oppermann, H. Jornvall, B. Persson
Date
:
20 Jun 00 (Deposition) - 26 Sep 01 (Release) - 26 Sep 01 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Sdr, 17Beta-Hydroxysteroid Dehydrogenase, Erab
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Nordling, U. C. Oppermann, H. Jornvall, B. Persson
Human Type 10 17 Beta-Hydroxysteroid Dehydrogenase: Molecular Modelling And Substrate Docking.
J. Mol. Graph. Model. V. 19 514 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NAHa)
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Label:
No.
Name
Count
Type
Full Name
1
NAH
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015987 (L122V, chain A, )
2: VAR_015988 (R130C, chain A, )
3: VAR_032093 (N247S, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015987
L
122
V
HCD2_HUMAN
Disease (MHBD deficiency)
28935476
A
L
122
V
2
UniProt
VAR_015988
R
130
C
HCD2_HUMAN
Disease (MHBD deficiency)
28935475
A
R
130
C
3
UniProt
VAR_032093
N
247
S
HCD2_HUMAN
Disease (MHBD deficiency)
---
A
N
247
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:155-183)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
HCD2_HUMAN
155-183
1
A:155-183
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:1-9)
Exon 1.2 (A:10-64)
Exon 1.3a (A:65-119)
Exon 1.4a (A:120-162)
Exon 1.5c (A:163-199)
Exon 1.6b (A:199-261)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3a
4: Boundary 1.3a/1.4a
5: Boundary 1.4a/1.5c
6: Boundary 1.5c/1.6b
7: Boundary 1.6b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000168216
1a
ENSE00001038851
X:53461320-53461266
55
HCD2_HUMAN
1-9
9
1
A:1-9
9
1.2
ENST00000168216
2
ENSE00000846304
X:53460833-53460669
165
HCD2_HUMAN
10-64
55
1
A:10-64
55
1.3a
ENST00000168216
3a
ENSE00000671344
X:53459359-53459195
165
HCD2_HUMAN
65-119
55
1
A:65-119
55
1.4a
ENST00000168216
4a
ENSE00000671345
X:53459064-53458936
129
HCD2_HUMAN
120-162
43
1
A:120-162
43
1.5c
ENST00000168216
5c
ENSE00000671346
X:53458854-53458746
109
HCD2_HUMAN
163-199
37
1
A:163-199
37
1.6b
ENST00000168216
6b
ENSE00000846303
X:53458542-53458206
337
HCD2_HUMAN
199-261
63
1
A:199-261
63
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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