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Asym. Unit
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Asym.Unit (93 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
DIMERIC STRUCTURE OF THE COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR D1 DOMAIN
Authors
:
M. J. Van Raaij, E. Chouin, H. Van Der Zandt, J. M. Bergelson, S. Cusack
Date
:
18 Jun 00 (Deposition) - 08 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Immunoglobulin V Domain Fold, Symmetric Dimer, Viral Protein Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Van Raaij, E. Chouin, H. Van Der Zandt, J. M. Bergelson, S. Cusack
Dimeric Structure Of The Coxsackievirus And Adenovirus Receptor D1 Domain At 1. 7 A Resolution.
Structure Fold. Des. V. 8 1147 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:23 , THR A:24 , HOH A:485 , GLU B:27 , MET B:28 , HOH B:422 , HOH B:423 , HOH B:495
BINDING SITE FOR RESIDUE SO4 B 401
2
AC2
SOFTWARE
THR A:117 , LYS A:132 , HIS A:134 , LYS B:42 , HOH B:482
BINDING SITE FOR RESIDUE SO4 A 402
3
AC3
SOFTWARE
GLU B:26 , LYS B:131
BINDING SITE FOR RESIDUE SO4 B 403
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(3, 6)
Info
All Exons
Exon 1.4b (A:16-70 | B:19-70)
Exon 1.5 (A:71-139 | B:71-139)
Exon 1.6 (A:139-139 | B:139-139)
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All Exon Boundaries
1: Boundary 1.1a/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284878
1a
ENSE00001356018
chr21:
18884700-18885490
791
CXAR_HUMAN
1-15
15
0
-
-
1.4b
ENST00000284878
4b
ENSE00001370254
chr21:
18919345-18919511
167
CXAR_HUMAN
15-70
56
2
A:16-70
B:19-70
55
52
1.5
ENST00000284878
5
ENSE00001016957
chr21:
18924067-18924271
205
CXAR_HUMAN
71-139
69
2
A:71-139
B:71-139
69
69
1.6
ENST00000284878
6
ENSE00001016954
chr21:
18931294-18931449
156
CXAR_HUMAN
139-191
53
2
A:139-139
B:139-139
1
1
1.7
ENST00000284878
7
ENSE00001016953
chr21:
18933020-18933142
123
CXAR_HUMAN
191-232
42
0
-
-
1.8
ENST00000284878
8
ENSE00001016956
chr21:
18933656-18933794
139
CXAR_HUMAN
232-278
47
0
-
-
1.9f
ENST00000284878
9f
ENSE00001918181
chr21:
18937746-18942418
4673
CXAR_HUMAN
278-365
88
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1f5wa_ (A:)
1b: SCOP_d1f5wb_ (B:)
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)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Coxsackie virus and adenovirus receptor (Car), domain 1
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1f5wa_
A:
1b
d1f5wb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1f5wB00 (B:19-139)
1b: CATH_1f5wA00 (A:16-139)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1f5wB00
B:19-139
1b
1f5wA00
A:16-139
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (93 KB)
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