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1F5Q
Biol. Unit 2
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Asym.Unit (181 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURINE GAMMA HERPESVIRUS CYCLIN COMPLEXED TO HUMAN CYCLIN DEPENDENT KINASE 2
Authors
:
G. L. Card, P. Knowles, H. Laman, N. Jones, N. Q. Mcdonald
Date
:
15 Jun 00 (Deposition) - 27 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Herpesviral Cyclin, Cyclin Dependent Kinase. Protein/Protein Complex, Transferase
(Keyword Search:
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)
Reference
:
G. L. Card, P. Knowles, H. Laman, N. Jones, N. Q. Mcdonald
Crystal Structure Of A Gamma-Herpesvirus Cyclin-Cdk Complex.
Embo J. V. 19 2877 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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All Hetero Components
1a: CHLORIDE ION (CLa)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_016157 (Y15S, chain C, )
2: VAR_053927 (V18L, chain C, )
3: VAR_041972 (P45L, chain C, )
4: VAR_019988 (T290S, chain C, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016157
Y
15
S
CDK2_HUMAN
Polymorphism
3087335
C
Y
15
S
2
UniProt
VAR_053927
V
18
L
CDK2_HUMAN
Polymorphism
11554376
C
V
18
L
3
UniProt
VAR_041972
P
45
L
CDK2_HUMAN
Unclassified
---
C
P
45
L
4
UniProt
VAR_019988
T
290
S
CDK2_HUMAN
Polymorphism
2069413
C
T
290
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (C:12-33)
2: PROTEIN_KINASE_ST (C:123-135)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK2_HUMAN
10-33
1
-
C:12-33
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK2_HUMAN
123-135
1
-
C:123-135
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1f5qb1 (B:6-146)
1b: SCOP_d1f5qb2 (B:147-252)
1c: SCOP_d1f5qd1 (D:5-146)
1d: SCOP_d1f5qd2 (D:147-252)
2a: SCOP_d1f5qa_ (A:)
2b: SCOP_d1f5qc_ (C:)
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
Viral cyclin
(7)
Murine herpesvirus 68 [TaxId: 33708]
(1)
1a
d1f5qb1
B:6-146
1b
d1f5qb2
B:147-252
1c
d1f5qd1
D:5-146
1d
d1f5qd2
D:147-252
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Human (Homo sapiens) [TaxId: 9606]
(336)
2a
d1f5qa_
A:
2b
d1f5qc_
C:
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1f5qA01 (A:1-84)
1b: CATH_1f5qC01 (C:1-84)
2a: CATH_1f5qB02 (B:6-36,B:146-252)
2b: CATH_1f5qD02 (D:6-36,D:146-252)
2c: CATH_1f5qB01 (B:37-145)
2d: CATH_1f5qD01 (D:37-145)
3a: CATH_1f5qC02 (C:85-294)
3b: CATH_1f5qA02 (A:85-297)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1f5qA01
A:1-84
1b
1f5qC01
C:1-84
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Human (Homo sapiens)
(84)
2a
1f5qB02
B:6-36,B:146-252
2b
1f5qD02
D:6-36,D:146-252
2c
1f5qB01
B:37-145
2d
1f5qD01
D:37-145
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
1f5qC02
C:85-294
3b
1f5qA02
A:85-297
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Pfam Domains
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Asymmetric Unit 1
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