PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1F52
Asym. Unit
Info
Asym.Unit (973 KB)
Biol.Unit 1 (959 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM CO-CRYSTALLIZED WITH ADP
Authors
:
H. S. Gill, G. M. U. Pfluegl, D. Eisenberg
Date
:
12 Jun 00 (Deposition) - 28 Jun 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.49
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Glutamine Synthetase, Adp, Mpd, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. S. Gill, D. Eisenberg
The Crystal Structure Of Phosphinothricin In The Active Site Of Glutamine Synthetase Illuminates The Mechanism Of Enzymatic Inhibition.
Biochemistry V. 40 1903 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 60)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
1k: ADENOSINE-5'-DIPHOSPHATE (ADPk)
1l: ADENOSINE-5'-DIPHOSPHATE (ADPl)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
2m: MANGANESE (II) ION (MNm)
2n: MANGANESE (II) ION (MNn)
2o: MANGANESE (II) ION (MNo)
2p: MANGANESE (II) ION (MNp)
2q: MANGANESE (II) ION (MNq)
2r: MANGANESE (II) ION (MNr)
2s: MANGANESE (II) ION (MNs)
2t: MANGANESE (II) ION (MNt)
2u: MANGANESE (II) ION (MNu)
2v: MANGANESE (II) ION (MNv)
2w: MANGANESE (II) ION (MNw)
2x: MANGANESE (II) ION (MNx)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
3i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
3k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
3l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
3m: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDm)
3n: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDn)
3o: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDo)
3p: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDp)
3q: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDq)
3r: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDr)
3s: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDs)
3t: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDt)
3u: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDu)
3v: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDv)
3w: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDw)
3x: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
12
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MN
24
Ligand/Ion
MANGANESE (II) ION
3
MPD
24
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
]
Sites
(60, 60)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:131 , GLU A:212 , GLU A:220 , HOH A:5729 , HOH A:5732
BINDING SITE FOR RESIDUE MN A 469
02
AC2
SOFTWARE
GLU A:129 , HIS A:269 , GLU A:357 , ADP A:4471 , HOH A:5734 , HOH A:5741
BINDING SITE FOR RESIDUE MN A 470
03
AC3
SOFTWARE
GLU B:131 , GLU B:212 , GLU B:220 , HOH B:5730 , HOH B:5733
BINDING SITE FOR RESIDUE MN B 469
04
AC4
SOFTWARE
GLU B:129 , HIS B:269 , GLU B:357 , ADP B:4472 , HOH B:5735 , HOH B:5742
BINDING SITE FOR RESIDUE MN B 470
05
AC5
SOFTWARE
GLU C:131 , GLU C:212 , GLU C:220 , HOH C:5730 , HOH C:5733
BINDING SITE FOR RESIDUE MN C 469
06
AC6
SOFTWARE
GLU C:129 , HIS C:269 , GLU C:357 , ADP C:4473 , HOH C:5735 , HOH C:5742
BINDING SITE FOR RESIDUE MN C 470
07
AC7
SOFTWARE
GLU D:131 , GLU D:212 , GLU D:220 , HOH D:1148 , HOH D:1151
BINDING SITE FOR RESIDUE MN D 469
08
AC8
SOFTWARE
GLU D:129 , HIS D:269 , GLU D:357 , HOH D:1153 , HOH D:1160 , ADP D:4474
BINDING SITE FOR RESIDUE MN D 470
09
AC9
SOFTWARE
GLU E:131 , GLU E:212 , GLU E:220 , HOH E:1440 , HOH E:1443
BINDING SITE FOR RESIDUE MN E 469
10
BC1
SOFTWARE
GLU E:129 , HIS E:269 , GLU E:357 , HOH E:1445 , HOH E:1452 , ADP E:4475
BINDING SITE FOR RESIDUE MN E 470
11
BC2
SOFTWARE
GLU F:131 , GLU F:212 , GLU F:220 , HOH F:5742 , HOH F:5745
BINDING SITE FOR RESIDUE MN F 469
12
BC3
SOFTWARE
GLU F:129 , HIS F:269 , GLU F:357 , ADP F:4476 , HOH F:5747 , HOH F:5754
BINDING SITE FOR RESIDUE MN F 470
13
BC4
SOFTWARE
GLU G:131 , GLU G:212 , GLU G:220 , HOH G:5740 , HOH G:5743
BINDING SITE FOR RESIDUE MN G 469
14
BC5
SOFTWARE
GLU G:129 , HIS G:269 , GLU G:357 , ADP G:4477 , HOH G:5745 , HOH G:5752
BINDING SITE FOR RESIDUE MN G 470
15
BC6
SOFTWARE
GLU H:131 , GLU H:212 , GLU H:220 , HOH H:5748 , HOH H:5751
BINDING SITE FOR RESIDUE MN H 469
16
BC7
SOFTWARE
GLU H:129 , HIS H:269 , GLU H:357 , ADP H:4478 , HOH H:5753 , HOH H:5760
BINDING SITE FOR RESIDUE MN H 470
17
BC8
SOFTWARE
GLU I:131 , GLU I:212 , GLU I:220 , HOH I:5755 , HOH I:5758
BINDING SITE FOR RESIDUE MN I 469
18
BC9
SOFTWARE
GLU I:129 , HIS I:269 , GLU I:357 , ADP I:4479 , HOH I:5760 , HOH I:5767
BINDING SITE FOR RESIDUE MN I 470
19
CC1
SOFTWARE
GLU J:131 , GLU J:212 , GLU J:220 , HOH J:2900 , HOH J:2903
BINDING SITE FOR RESIDUE MN J 469
20
CC2
SOFTWARE
GLU J:129 , HIS J:269 , GLU J:357 , HOH J:2905 , HOH J:2912 , ADP J:4480
BINDING SITE FOR RESIDUE MN J 470
21
CC3
SOFTWARE
GLU K:131 , GLU K:212 , GLU K:220 , HOH K:3192 , HOH K:3195
BINDING SITE FOR RESIDUE MN K 469
22
CC4
SOFTWARE
GLU K:129 , HIS K:269 , GLU K:357 , HOH K:3197 , HOH K:3204 , ADP K:4481
BINDING SITE FOR RESIDUE MN K 470
23
CC5
SOFTWARE
GLU L:131 , GLU L:212 , GLU L:220 , HOH L:3484 , HOH L:3487
BINDING SITE FOR RESIDUE MN L 469
24
CC6
SOFTWARE
GLU L:129 , HIS L:269 , GLU L:357 , HOH L:3489 , HOH L:3496 , ADP L:4482
BINDING SITE FOR RESIDUE MN L 470
25
CC7
SOFTWARE
GLY A:127 , GLU A:129 , GLU A:207 , THR A:223 , ARG A:224 , PHE A:225 , HIS A:271 , SER A:273 , ARG A:344 , ARG A:355 , GLU A:357 , MN A:470 , HOH A:5727 , HOH A:5734 , HOH A:5741 , HOH A:5753
BINDING SITE FOR RESIDUE ADP A 4471
26
CC8
SOFTWARE
GLY B:127 , GLU B:129 , GLU B:207 , THR B:223 , ARG B:224 , PHE B:225 , HIS B:271 , SER B:273 , ARG B:344 , ARG B:355 , GLU B:357 , MN B:470 , HOH B:5728 , HOH B:5735 , HOH B:5742 , HOH B:5756
BINDING SITE FOR RESIDUE ADP B 4472
27
CC9
SOFTWARE
GLY C:127 , GLU C:129 , GLU C:207 , THR C:223 , ARG C:224 , PHE C:225 , HIS C:271 , SER C:273 , ARG C:344 , ARG C:355 , GLU C:357 , MN C:470 , HOH C:5728 , HOH C:5735 , HOH C:5742 , HOH C:5756
BINDING SITE FOR RESIDUE ADP C 4473
28
DC1
SOFTWARE
GLY D:127 , GLU D:129 , GLU D:207 , THR D:223 , ARG D:224 , PHE D:225 , HIS D:271 , SER D:273 , ARG D:344 , ARG D:355 , GLU D:357 , MN D:470 , HOH D:1146 , HOH D:1153 , HOH D:1160 , HOH D:1372
BINDING SITE FOR RESIDUE ADP D 4474
29
DC2
SOFTWARE
GLY E:127 , GLU E:129 , GLU E:207 , THR E:223 , ARG E:224 , PHE E:225 , HIS E:271 , SER E:273 , ARG E:344 , ARG E:355 , GLU E:357 , MN E:470 , HOH E:1438 , HOH E:1445 , HOH E:1452 , HOH E:1664
BINDING SITE FOR RESIDUE ADP E 4475
30
DC3
SOFTWARE
GLY F:127 , GLU F:129 , GLU F:207 , THR F:223 , ARG F:224 , PHE F:225 , HIS F:271 , SER F:273 , ARG F:344 , ARG F:355 , GLU F:357 , MN F:470 , HOH F:5487 , HOH F:5740 , HOH F:5747 , HOH F:5754
BINDING SITE FOR RESIDUE ADP F 4476
31
DC4
SOFTWARE
GLY G:127 , GLU G:129 , GLU G:207 , THR G:223 , ARG G:224 , PHE G:225 , HIS G:271 , SER G:273 , ARG G:344 , ARG G:355 , GLU G:357 , MN G:470 , HOH G:5738 , HOH G:5745 , HOH G:5752 , HOH G:5772
BINDING SITE FOR RESIDUE ADP G 4477
32
DC5
SOFTWARE
GLY H:127 , GLU H:129 , GLU H:207 , THR H:223 , ARG H:224 , PHE H:225 , HIS H:271 , SER H:273 , ARG H:344 , ARG H:355 , GLU H:357 , MN H:470 , HOH H:5504 , HOH H:5746 , HOH H:5753 , HOH H:5760
BINDING SITE FOR RESIDUE ADP H 4478
33
DC6
SOFTWARE
GLY I:127 , GLU I:129 , GLU I:207 , THR I:223 , ARG I:224 , PHE I:225 , HIS I:271 , SER I:273 , ARG I:344 , ARG I:355 , GLU I:357 , MN I:470 , HOH I:5506 , HOH I:5753 , HOH I:5760 , HOH I:5767
BINDING SITE FOR RESIDUE ADP I 4479
34
DC7
SOFTWARE
GLY J:127 , GLU J:129 , GLU J:207 , THR J:223 , ARG J:224 , PHE J:225 , HIS J:271 , SER J:273 , ARG J:344 , ARG J:355 , GLU J:357 , MN J:470 , HOH J:2540 , HOH J:2898 , HOH J:2905 , HOH J:2912
BINDING SITE FOR RESIDUE ADP J 4480
35
DC8
SOFTWARE
GLY K:127 , GLU K:129 , GLU K:207 , THR K:223 , ARG K:224 , PHE K:225 , HIS K:271 , SER K:273 , ARG K:344 , ARG K:355 , GLU K:357 , MN K:470 , HOH K:2832 , HOH K:3190 , HOH K:3197 , HOH K:3204
BINDING SITE FOR RESIDUE ADP K 4481
36
DC9
SOFTWARE
GLY L:127 , GLU L:129 , GLU L:207 , THR L:223 , ARG L:224 , PHE L:225 , HIS L:271 , SER L:273 , ARG L:344 , ARG L:355 , GLU L:357 , MN L:470 , HOH L:3124 , HOH L:3482 , HOH L:3489 , HOH L:3496
BINDING SITE FOR RESIDUE ADP L 4482
37
EC1
SOFTWARE
GLN A:189 , ASP A:190 , SER A:193 , HIS A:209 , PHE B:16 , PHE B:80 , ALA B:81 , ASP B:82 , THR B:84
BINDING SITE FOR RESIDUE MPD B 5471
38
EC2
SOFTWARE
ARG A:20 , PHE A:21 , THR A:22 , ARG A:88 , CYS A:89 , ASP A:90 , ASP A:103 , ARG A:105 , ASP A:233 , TYR A:368
BINDING SITE FOR RESIDUE MPD A 5472
39
EC3
SOFTWARE
GLN B:189 , ASP B:190 , SER B:193 , HIS B:209 , PHE C:16 , PHE C:80 , ALA C:81 , ASP C:82 , THR C:84
BINDING SITE FOR RESIDUE MPD C 5473
40
EC4
SOFTWARE
ARG B:20 , PHE B:21 , THR B:22 , ARG B:88 , CYS B:89 , ASP B:90 , ASP B:103 , ARG B:105 , ASP B:233 , TYR B:368
BINDING SITE FOR RESIDUE MPD B 5474
41
EC5
SOFTWARE
GLN C:189 , ASP C:190 , SER C:193 , HIS C:209 , PHE D:16 , PHE D:80 , ALA D:81 , ASP D:82 , THR D:84
BINDING SITE FOR RESIDUE MPD D 5475
42
EC6
SOFTWARE
ARG C:20 , PHE C:21 , THR C:22 , ARG C:88 , CYS C:89 , ASP C:90 , ASP C:103 , ARG C:105 , ASP C:233 , TYR C:368
BINDING SITE FOR RESIDUE MPD C 5476
43
EC7
SOFTWARE
GLN D:189 , ASP D:190 , SER D:193 , HIS D:209 , PHE E:16 , PHE E:80 , ALA E:81 , ASP E:82 , THR E:84
BINDING SITE FOR RESIDUE MPD E 5477
44
EC8
SOFTWARE
ARG D:20 , PHE D:21 , THR D:22 , ARG D:88 , CYS D:89 , ASP D:90 , ASP D:103 , ARG D:105 , ASP D:233 , TYR D:368
BINDING SITE FOR RESIDUE MPD D 5478
45
EC9
SOFTWARE
GLN E:189 , ASP E:190 , SER E:193 , HIS E:209 , PHE F:16 , PHE F:80 , ALA F:81 , ASP F:82 , THR F:84
BINDING SITE FOR RESIDUE MPD F 5479
46
FC1
SOFTWARE
ARG E:20 , PHE E:21 , THR E:22 , ARG E:88 , CYS E:89 , ASP E:90 , ASP E:103 , ARG E:105 , ASP E:233 , TYR E:368
BINDING SITE FOR RESIDUE MPD E 5480
47
FC2
SOFTWARE
PHE A:16 , PHE A:80 , ALA A:81 , ASP A:82 , THR A:84 , GLN F:189 , ASP F:190 , SER F:193 , HIS F:209
BINDING SITE FOR RESIDUE MPD A 5481
48
FC3
SOFTWARE
ARG F:20 , PHE F:21 , THR F:22 , ARG F:88 , CYS F:89 , ASP F:90 , ASP F:103 , ARG F:105 , ASP F:233 , TYR F:368
BINDING SITE FOR RESIDUE MPD F 5482
49
FC4
SOFTWARE
GLN G:189 , ASP G:190 , SER G:193 , HIS G:209 , PHE L:16 , PHE L:80 , ALA L:81 , ASP L:82 , THR L:84
BINDING SITE FOR RESIDUE MPD L 5483
50
FC5
SOFTWARE
ARG G:20 , PHE G:21 , THR G:22 , ARG G:88 , CYS G:89 , ASP G:90 , ASP G:103 , ARG G:105 , ASP G:233 , TYR G:368
BINDING SITE FOR RESIDUE MPD G 5484
51
FC6
SOFTWARE
PHE G:16 , PHE G:80 , ALA G:81 , ASP G:82 , THR G:84 , GLN H:189 , ASP H:190 , SER H:193 , HIS H:209
BINDING SITE FOR RESIDUE MPD G 5485
52
FC7
SOFTWARE
ARG H:20 , PHE H:21 , THR H:22 , ARG H:88 , CYS H:89 , ASP H:90 , ASP H:103 , ARG H:105 , ASP H:233 , TYR H:368
BINDING SITE FOR RESIDUE MPD H 5486
53
FC8
SOFTWARE
PHE H:16 , PHE H:80 , ALA H:81 , ASP H:82 , THR H:84 , GLN I:189 , ASP I:190 , SER I:193 , HIS I:209
BINDING SITE FOR RESIDUE MPD H 5487
54
FC9
SOFTWARE
ARG I:20 , PHE I:21 , THR I:22 , ARG I:88 , CYS I:89 , ASP I:90 , ASP I:103 , ARG I:105 , ASP I:233 , TYR I:368
BINDING SITE FOR RESIDUE MPD I 5488
55
GC1
SOFTWARE
PHE I:16 , PHE I:80 , ALA I:81 , ASP I:82 , THR I:84 , GLN J:189 , ASP J:190 , SER J:193 , HIS J:209
BINDING SITE FOR RESIDUE MPD I 5489
56
GC2
SOFTWARE
ARG J:20 , PHE J:21 , THR J:22 , ARG J:88 , CYS J:89 , ASP J:90 , ASP J:103 , ARG J:105 , ASP J:233 , TYR J:368
BINDING SITE FOR RESIDUE MPD J 5490
57
GC3
SOFTWARE
PHE J:16 , PHE J:80 , ALA J:81 , ASP J:82 , THR J:84 , GLN K:189 , ASP K:190 , SER K:193 , HIS K:209
BINDING SITE FOR RESIDUE MPD J 5491
58
GC4
SOFTWARE
ARG K:20 , PHE K:21 , THR K:22 , ARG K:88 , CYS K:89 , ASP K:90 , ASP K:103 , ARG K:105 , ASP K:233 , TYR K:368
BINDING SITE FOR RESIDUE MPD K 5492
59
GC5
SOFTWARE
PHE K:16 , PHE K:80 , ALA K:81 , ASP K:82 , THR K:84 , GLN L:189 , ASP L:190 , SER L:193 , HIS L:209
BINDING SITE FOR RESIDUE MPD K 5493
60
GC6
SOFTWARE
ARG L:20 , PHE L:21 , THR L:22 , ARG L:88 , CYS L:89 , ASP L:90 , ASP L:103 , ARG L:105 , ASP L:233 , TYR L:368
BINDING SITE FOR RESIDUE MPD L 5494
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 36)
Info
All PROSITE Patterns/Profiles
1: GLNA_1 (A:49-67,B:49-67,C:49-67,D:49-67,E:...)
2: GLNA_ATP (A:258-273,B:258-273,C:258-273,D:25...)
3: GLNA_ADENYLATION (A:385-397,B:385-397,C:385-397,D:38...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLNA_1
PS00180
Glutamine synthetase signature 1.
GLN1B_SALTY
50-68
12
A:49-67
B:49-67
C:49-67
D:49-67
E:49-67
F:49-67
G:49-67
H:49-67
I:49-67
J:49-67
K:49-67
L:49-67
2
GLNA_ATP
PS00181
Glutamine synthetase putative ATP-binding region signature.
GLN1B_SALTY
259-274
12
A:258-273
B:258-273
C:258-273
D:258-273
E:258-273
F:258-273
G:258-273
H:258-273
I:258-273
J:258-273
K:258-273
L:258-273
3
GLNA_ADENYLATION
PS00182
Glutamine synthetase class-I adenylation site.
GLN1B_SALTY
386-398
12
A:385-397
B:385-397
C:385-397
D:385-397
E:385-397
F:385-397
G:385-397
H:385-397
I:385-397
J:385-397
K:385-397
L:385-397
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d1f52a1 (A:1-100)
1b: SCOP_d1f52b1 (B:1-100)
1c: SCOP_d1f52k1 (K:1-100)
1d: SCOP_d1f52l1 (L:1-100)
1e: SCOP_d1f52c1 (C:1-100)
1f: SCOP_d1f52d1 (D:1-100)
1g: SCOP_d1f52e1 (E:1-100)
1h: SCOP_d1f52f1 (F:1-100)
1i: SCOP_d1f52g1 (G:1-100)
1j: SCOP_d1f52h1 (H:1-100)
1k: SCOP_d1f52i1 (I:1-100)
1l: SCOP_d1f52j1 (J:1-100)
2a: SCOP_d1f52a2 (A:101-468)
2b: SCOP_d1f52b2 (B:101-468)
2c: SCOP_d1f52k2 (K:101-468)
2d: SCOP_d1f52l2 (L:101-468)
2e: SCOP_d1f52c2 (C:101-468)
2f: SCOP_d1f52d2 (D:101-468)
2g: SCOP_d1f52e2 (E:101-468)
2h: SCOP_d1f52f2 (F:101-468)
2i: SCOP_d1f52g2 (G:101-468)
2j: SCOP_d1f52h2 (H:101-468)
2k: SCOP_d1f52i2 (I:101-468)
2l: SCOP_d1f52j2 (J:101-468)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
Glutamine synthetase, N-terminal domain
(8)
Protein domain
:
Glutamine synthetase, N-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
1a
d1f52a1
A:1-100
1b
d1f52b1
B:1-100
1c
d1f52k1
K:1-100
1d
d1f52l1
L:1-100
1e
d1f52c1
C:1-100
1f
d1f52d1
D:1-100
1g
d1f52e1
E:1-100
1h
d1f52f1
F:1-100
1i
d1f52g1
G:1-100
1j
d1f52h1
H:1-100
1k
d1f52i1
I:1-100
1l
d1f52j1
J:1-100
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Glutamine synthetase catalytic domain
(8)
Protein domain
:
Glutamine synthetase, C-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
2a
d1f52a2
A:101-468
2b
d1f52b2
B:101-468
2c
d1f52k2
K:101-468
2d
d1f52l2
L:101-468
2e
d1f52c2
C:101-468
2f
d1f52d2
D:101-468
2g
d1f52e2
E:101-468
2h
d1f52f2
F:101-468
2i
d1f52g2
G:101-468
2j
d1f52h2
H:101-468
2k
d1f52i2
I:101-468
2l
d1f52j2
J:101-468
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_1f52A01 (A:104-456)
1b: CATH_1f52B01 (B:104-456)
1c: CATH_1f52K01 (K:104-456)
1d: CATH_1f52L01 (L:104-456)
1e: CATH_1f52C01 (C:104-456)
1f: CATH_1f52D01 (D:104-456)
1g: CATH_1f52E01 (E:104-456)
1h: CATH_1f52F01 (F:104-456)
1i: CATH_1f52G01 (G:104-456)
1j: CATH_1f52H01 (H:104-456)
1k: CATH_1f52I01 (I:104-456)
1l: CATH_1f52J01 (J:104-456)
2a: CATH_1f52A02 (A:1-103)
2b: CATH_1f52B02 (B:1-103)
2c: CATH_1f52K02 (K:1-103)
2d: CATH_1f52L02 (L:1-103)
2e: CATH_1f52C02 (C:1-103)
2f: CATH_1f52D02 (D:1-103)
2g: CATH_1f52E02 (E:1-103)
2h: CATH_1f52F02 (F:1-103)
2i: CATH_1f52G02 (G:1-103)
2j: CATH_1f52H02 (H:1-103)
2k: CATH_1f52I02 (I:1-103)
2l: CATH_1f52J02 (J:1-103)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Salmonella typhimurium. Organism_taxid: 602.
(2)
1a
1f52A01
A:104-456
1b
1f52B01
B:104-456
1c
1f52K01
K:104-456
1d
1f52L01
L:104-456
1e
1f52C01
C:104-456
1f
1f52D01
D:104-456
1g
1f52E01
E:104-456
1h
1f52F01
F:104-456
1i
1f52G01
G:104-456
1j
1f52H01
H:104-456
1k
1f52I01
I:104-456
1l
1f52J01
J:104-456
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.70, no name defined]
(11)
Salmonella typhimurium. Organism_taxid: 602.
(2)
2a
1f52A02
A:1-103
2b
1f52B02
B:1-103
2c
1f52K02
K:1-103
2d
1f52L02
L:1-103
2e
1f52C02
C:1-103
2f
1f52D02
D:1-103
2g
1f52E02
E:1-103
2h
1f52F02
F:1-103
2i
1f52G02
G:1-103
2j
1f52H02
H:1-103
2k
1f52I02
I:1-103
2l
1f52J02
J:1-103
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (973 KB)
Header - Asym.Unit
Biol.Unit 1 (959 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1F52
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
