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1F3U
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (52 KB)
Biol.Unit 4 (47 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RAP30/74 INTERACTION DOMAINS OF HUMAN TFIIF
Authors
:
F. Gaiser, S. Tan, T. J. Richmond
Date
:
06 Jun 00 (Deposition) - 11 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
General Transcription Initiation And Elongation Factor, Rna Polymerase Ii, Novel Dimerization Fold, Beta Barrel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Gaiser, S. Tan, T. J. Richmond
Novel Dimerization Fold Of Rap30/Rap74 In Human Tfiif At 1. 7 A Resolution.
J. Mol. Biol. V. 302 1119 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(10, 38)
Info
All Exons
Exon 1.1 (A:2-22 | C:2-22 | E:2-22 | G:2-22)
Exon 1.2 (A:23-47 | C:23-47 | E:23-47 | G:23...)
Exon 1.3 (A:47-53 | C:47-53 | E:47-53 | G:47...)
Exon 1.4 (A:54-102 | C:54-102 | E:54-102 | G...)
Exon 1.5b (A:102-119 | C:102-119 | E:102-119 ...)
Exon 2.2 (B:5-20 | D:7-20 | F:5-20 | H:7-20)
Exon 2.3 (B:20-44 | D:20-44 | F:20-44 | H:20...)
Exon 2.4 (B:45-109 (gaps) | D:45-109 (gaps) ...)
Exon 2.5 (B:109-153 | D:109-166 | F:109-166 ...)
Exon 2.6 (- | D:166-168 | F:166-168 | -)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5b
06: Boundary 1.5b/1.8
07: Boundary 2.1/2.2
08: Boundary 2.2/2.3
09: Boundary 2.3/2.4
10: Boundary 2.4/2.5
11: Boundary 2.5/2.6
12: Boundary 2.6/2.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000340473
1
ENSE00001479865
chr13:
45694650-45694856
207
T2FB_HUMAN
1-22
22
4
A:2-22
C:2-22
E:2-22
G:2-22
21
21
21
21
1.2
ENST00000340473
2
ENSE00001389810
chr13:
45710868-45710941
74
T2FB_HUMAN
23-47
25
4
A:23-47
C:23-47
E:23-47
G:23-47
25
25
25
25
1.3
ENST00000340473
3
ENSE00001629288
chr13:
45723905-45723923
19
T2FB_HUMAN
47-53
7
4
A:47-53
C:47-53
E:47-53
G:47-53
7
7
7
7
1.4
ENST00000340473
4
ENSE00001370421
chr13:
45725822-45725966
145
T2FB_HUMAN
54-102
49
4
A:54-102
C:54-102
E:54-102
G:54-102
49
49
49
49
1.5b
ENST00000340473
5b
ENSE00001364027
chr13:
45781559-45781640
82
T2FB_HUMAN
102-129
28
4
A:102-119
C:102-119
E:102-119
G:102-119
18
18
18
18
1.8
ENST00000340473
8
ENSE00001369464
chr13:
45827006-45827105
100
T2FB_HUMAN
129-162
34
0
-
-
1.9c
ENST00000340473
9c
ENSE00001377067
chr13:
45841368-45841511
144
T2FB_HUMAN
163-210
48
0
-
-
1.10
ENST00000340473
10
ENSE00001400657
chr13:
45857577-45858237
661
T2FB_HUMAN
211-249
39
0
-
-
2.1
ENST00000394456
1
ENSE00002168237
chr19:
6393291-6392995
297
T2FA_HUMAN
1-4
4
0
-
-
2.2
ENST00000394456
2
ENSE00001664061
chr19:
6392914-6392868
47
T2FA_HUMAN
5-20
16
4
B:5-20
D:7-20
F:5-20
H:7-20
16
14
16
14
2.3
ENST00000394456
3
ENSE00001720340
chr19:
6391985-6391913
73
T2FA_HUMAN
20-44
25
4
B:20-44
D:20-44
F:20-44
H:20-44
25
25
25
25
2.4
ENST00000394456
4
ENSE00000666056
chr19:
6389648-6389455
194
T2FA_HUMAN
45-109
65
4
B:45-109 (gaps)
D:45-109 (gaps)
F:45-109 (gaps)
H:45-109 (gaps)
65
65
65
65
2.5
ENST00000394456
5
ENSE00000666058
chr19:
6387570-6387400
171
T2FA_HUMAN
109-166
58
4
B:109-153
D:109-166
F:109-166
H:109-153
45
58
58
45
2.6
ENST00000394456
6
ENSE00000666060
chr19:
6383506-6383322
185
T2FA_HUMAN
166-228
63
2
-
D:166-168
F:166-168
-
-
3
3
-
2.7
ENST00000394456
7
ENSE00001060029
chr19:
6381861-6381708
154
T2FA_HUMAN
228-279
52
0
-
-
2.8
ENST00000394456
8
ENSE00001060032
chr19:
6381626-6381565
62
T2FA_HUMAN
279-300
22
0
-
-
2.9
ENST00000394456
9
ENSE00001060028
chr19:
6381489-6381370
120
T2FA_HUMAN
300-340
41
0
-
-
2.10
ENST00000394456
10
ENSE00000666066
chr19:
6381206-6381133
74
T2FA_HUMAN
340-364
25
0
-
-
2.11
ENST00000394456
11
ENSE00000666068
chr19:
6381053-6380915
139
T2FA_HUMAN
365-411
47
0
-
-
2.12
ENST00000394456
12
ENSE00000666070
chr19:
6380701-6380584
118
T2FA_HUMAN
411-450
40
0
-
-
2.13
ENST00000394456
13
ENSE00001518517
chr19:
6380496-6379580
917
T2FA_HUMAN
450-517
68
0
-
-
[
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1f3ub_ (B:)
1b: SCOP_d1f3ud_ (D:)
1c: SCOP_d1f3uf_ (F:)
1d: SCOP_d1f3uh_ (H:)
2a: SCOP_d1f3ua_ (A:)
2b: SCOP_d1f3uc_ (C:)
2c: SCOP_d1f3ue_ (E:)
2d: SCOP_d1f3ug_ (G:)
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Class
:
All beta proteins
(24004)
Fold
:
triple barrel
(2)
Superfamily
:
Rap30/74 interaction domains
(2)
Family
:
Rap30/74 interaction domains
(2)
Protein domain
:
TFIIF alpha subunit, Rap74
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1f3ub_
B:
1b
d1f3ud_
D:
1c
d1f3uf_
F:
1d
d1f3uh_
H:
Protein domain
:
TFIIF beta subunit, Rap30
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1f3ua_
A:
2b
d1f3uc_
C:
2c
d1f3ue_
E:
2d
d1f3ug_
G:
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Asym.Unit (193 KB)
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Header - Biol.Unit 1
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