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1F3M
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (126 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SERINE/THREONINE KINASE PAK1
Authors
:
M. Lei, W. Lu, W. Meng, M. -C. Parrini, M. J. Eck, B. J. Mayer, S. C. Harriso
Date
:
05 Jun 00 (Deposition) - 29 Jun 00 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Kinase Domain, Autoinhibitory Fragment, Homodimer, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Lei, W. Lu, W. Meng, M. C. Parrini, M. J. Eck, B. J. Mayer, S. C. Harriso
Structure Of Pak1 In An Autoinhibited Conformation Reveals Multistage Activation Switch.
Cell(Cambridge, Mass. ) V. 102 387 2000
[
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Hetero Components
(1, 28)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
28
Ligand/Ion
IODIDE ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:132
BINDING SITE FOR RESIDUE IOD A 601
02
AC2
SOFTWARE
ASN C:468 , LEU C:470 , IOD C:616
BINDING SITE FOR RESIDUE IOD C 602
03
AC3
SOFTWARE
HOH D:631
BINDING SITE FOR RESIDUE IOD D 603
04
AC4
SOFTWARE
PRO D:325 , IOD D:628
BINDING SITE FOR RESIDUE IOD D 604
05
AC5
SOFTWARE
HOH C:653
BINDING SITE FOR RESIDUE IOD A 605
06
AC6
SOFTWARE
LYS A:114
BINDING SITE FOR RESIDUE IOD A 607
07
AC7
SOFTWARE
GLN A:102 , HOH A:667 , GLY B:98
BINDING SITE FOR RESIDUE IOD B 608
08
AC8
SOFTWARE
HOH C:628
BINDING SITE FOR RESIDUE IOD C 609
09
AC9
SOFTWARE
ASN C:466 , LYS D:268
BINDING SITE FOR RESIDUE IOD C 610
10
BC1
SOFTWARE
GLY C:364
BINDING SITE FOR RESIDUE IOD C 611
11
BC2
SOFTWARE
PRO C:325
BINDING SITE FOR RESIDUE IOD C 613
12
BC3
SOFTWARE
LYS A:119 , IOD B:615 , HOH B:652
BINDING SITE FOR RESIDUE IOD A 614
13
BC4
SOFTWARE
ASN A:120 , IOD A:614 , LYS B:119 , HOH C:695
BINDING SITE FOR RESIDUE IOD B 615
14
BC5
SOFTWARE
HOH A:640 , IOD C:602 , HOH C:629
BINDING SITE FOR RESIDUE IOD C 616
15
BC6
SOFTWARE
HOH B:660
BINDING SITE FOR RESIDUE IOD B 617
16
BC7
SOFTWARE
MET D:399
BINDING SITE FOR RESIDUE IOD D 619
17
BC8
SOFTWARE
LYS A:134
BINDING SITE FOR RESIDUE IOD A 620
18
BC9
SOFTWARE
GLY D:364
BINDING SITE FOR RESIDUE IOD D 621
19
CC1
SOFTWARE
ASP D:265
BINDING SITE FOR RESIDUE IOD D 622
20
CC2
SOFTWARE
LYS C:444
BINDING SITE FOR RESIDUE IOD C 623
21
CC3
SOFTWARE
HOH B:631
BINDING SITE FOR RESIDUE IOD B 624
22
CC4
SOFTWARE
LEU C:347 , ASP D:400
BINDING SITE FOR RESIDUE IOD D 625
23
CC5
SOFTWARE
GLU C:514 , HOH C:701
BINDING SITE FOR RESIDUE IOD C 627
24
CC6
SOFTWARE
LYS D:323 , ASN D:324 , IOD D:604
BINDING SITE FOR RESIDUE IOD D 628
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051654 (L515V, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051654
L
515
V
PAK1_HUMAN
Polymorphism
35345144
C/D
L
515
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (C:276-298,D:276-298)
2: PROTEIN_KINASE_ST (C:385-397,D:385-397)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PAK1_HUMAN
276-299
2
C:276-298
D:276-298
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
PAK1_HUMAN
385-397
2
C:385-397
D:385-397
[
close PROSITE info
]
Exons
(12, 24)
Info
All Exons
Exon 1.9b (A:78-97 | B:78-97 | - | -)
Exon 1.10d (A:98-147 | B:98-147 | - | -)
Exon 1.11 (A:147-147 | B:147-147 | - | -)
Exon 1.13d (- | - | C:249-258 | D:249-258)
Exon 1.14a (- | - | C:258-279 | D:258-279)
Exon 1.15c (- | - | C:279-295 | D:279-295)
Exon 1.17b (- | - | C:296-333 | D:296-333)
Exon 1.18 (- | - | C:333-372 | D:333-372)
Exon 1.19 (- | - | C:373-406 | D:373-406)
Exon 1.20c (- | - | C:406-471 (gaps) | D:406-4...)
Exon 1.21b (- | - | C:472-517 | D:472-517)
Exon 1.24e (- | - | C:518-542 | D:518-542)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.8b/1.9b
02: Boundary 1.9b/1.10d
03: Boundary 1.10d/1.11
04: Boundary 1.11/1.12a
05: Boundary 1.12a/1.13d
06: Boundary 1.13d/1.14a
07: Boundary 1.14a/1.15c
08: Boundary 1.15c/1.17b
09: Boundary 1.17b/1.18
10: Boundary 1.18/1.19
11: Boundary 1.19/1.20c
12: Boundary 1.20c/1.21b
13: Boundary 1.21b/1.24e
14: Boundary 1.24e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000356341
2a
ENSE00002168503
chr11:
77185107-77184597
511
PAK1_HUMAN
-
0
0
-
-
1.8b
ENST00000356341
8b
ENSE00002169181
chr11:
77103586-77103376
211
PAK1_HUMAN
1-64
64
0
-
-
1.9b
ENST00000356341
9b
ENSE00001153454
chr11:
77091039-77090939
101
PAK1_HUMAN
64-97
34
2
A:78-97
B:78-97
-
-
20
20
-
-
1.10d
ENST00000356341
10d
ENSE00001153445
chr11:
77090433-77090286
148
PAK1_HUMAN
98-147
50
2
A:98-147
B:98-147
-
-
50
50
-
-
1.11
ENST00000356341
11
ENSE00001153435
chr11:
77085410-77085373
38
PAK1_HUMAN
147-159
13
2
A:147-147
B:147-147
-
-
1
1
-
-
1.12a
ENST00000356341
12a
ENSE00000989702
chr11:
77070062-77069943
120
PAK1_HUMAN
160-199
40
0
-
-
1.13d
ENST00000356341
13d
ENSE00000989704
chr11:
77066887-77066713
175
PAK1_HUMAN
200-258
59
2
-
-
C:249-258
D:249-258
-
-
10
10
1.14a
ENST00000356341
14a
ENSE00000989705
chr11:
77064644-77064581
64
PAK1_HUMAN
258-279
22
2
-
-
C:258-279
D:258-279
-
-
22
22
1.15c
ENST00000356341
15c
ENSE00000989706
chr11:
77060332-77060284
49
PAK1_HUMAN
279-295
17
2
-
-
C:279-295
D:279-295
-
-
17
17
1.17b
ENST00000356341
17b
ENSE00001773725
chr11:
77054976-77054864
113
PAK1_HUMAN
296-333
38
2
-
-
C:296-333
D:296-333
-
-
38
38
1.18
ENST00000356341
18
ENSE00001665540
chr11:
77051808-77051691
118
PAK1_HUMAN
333-372
40
2
-
-
C:333-372
D:333-372
-
-
40
40
1.19
ENST00000356341
19
ENSE00001693116
chr11:
77048468-77048369
100
PAK1_HUMAN
373-406
34
2
-
-
C:373-406
D:373-406
-
-
34
34
1.20c
ENST00000356341
20c
ENSE00000989710
chr11:
77047327-77047131
197
PAK1_HUMAN
406-471
66
2
-
-
C:406-471 (gaps)
D:406-471 (gaps)
-
-
66
66
1.21b
ENST00000356341
21b
ENSE00001757209
chr11:
77043912-77043775
138
PAK1_HUMAN
472-517
46
2
-
-
C:472-517
D:472-517
-
-
46
46
1.24e
ENST00000356341
24e
ENSE00002141126
chr11:
77034405-77032752
1654
PAK1_HUMAN
518-545
28
2
-
-
C:518-542
D:518-542
-
-
25
25
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1f3mc_ (C:)
1b: SCOP_d1f3md_ (D:)
2a: SCOP_d1f3ma_ (A:)
2b: SCOP_d1f3mb_ (B:)
View:
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(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
pak1
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d1f3mc_
C:
1b
d1f3md_
D:
Class
:
Peptides
(792)
Fold
:
pak1 autoregulatory domain
(1)
Superfamily
:
pak1 autoregulatory domain
(1)
Family
:
pak1 autoregulatory domain
(1)
Protein domain
:
pak1 autoregulatory domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1f3ma_
A:
2b
d1f3mb_
B:
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1f3mC01 (C:249-346)
1b: CATH_1f3mD01 (D:249-346)
2a: CATH_1f3mA00 (A:78-147)
2b: CATH_1f3mB00 (B:78-147)
3a: CATH_1f3mC02 (C:347-542)
3b: CATH_1f3mD02 (D:347-541)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1f3mC01
C:249-346
1b
1f3mD01
D:249-346
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
SerineThreonine-protein kinase PAK-alpha; Chain A
(6)
Homologous Superfamily
:
SerineThreonine-protein kinase PAK-alpha; Chain A
(6)
Human (Homo sapiens)
(6)
2a
1f3mA00
A:78-147
2b
1f3mB00
B:78-147
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
1f3mC02
C:347-542
3b
1f3mD02
D:347-541
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (131 KB)
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