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1F3H
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE HUMAN ANTI-APOPTOTIC PROTEIN SURVIVIN
Authors
:
M. A. Verdecia, H. Huang, E. Dutil, T. Hunter, J. P. Noel
Date
:
03 Jun 00 (Deposition) - 06 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.58
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Apoptosis Inhibitor Survivin, Repeat, Thiol Protease Inhibitor, Alpha-Beta,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Verdecia, H. Huang, E. Dutil, D. A. Kaiser, T. Hunter, J. P. Noel
Structure Of The Human Anti-Apoptotic Protein Survivin Reveals A Dimeric Arrangement.
Nat. Struct. Biol. V. 7 602 2000
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:57 , CYS A:60 , HIS A:77 , CYS A:84
BINDING SITE FOR RESIDUE ZN A 341
2
AC2
SOFTWARE
CYS B:57 , CYS B:60 , HIS B:77 , CYS B:84
BINDING SITE FOR RESIDUE ZN B 342
3
AC3
SOFTWARE
LYS A:103 , ARG A:106 , HOH A:1089
BINDING SITE FOR RESIDUE SO4 A 500
4
AC4
SOFTWARE
LYS A:62 , GLU A:63 , LYS A:115
BINDING SITE FOR RESIDUE SO4 A 501
5
AC5
SOFTWARE
LYS B:103 , ARG B:106
BINDING SITE FOR RESIDUE SO4 B 502
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021071 (K129E, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021071
K
129
E
BIRC5_HUMAN
Polymorphism
2071214
A/B
K
129
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_2 (A:18-88,B:18-88)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_2
PS50143
BIR repeat profile.
BIRC5_HUMAN
18-88
2
A:18-88
B:18-88
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Exons
(4, 8)
Info
All Exons
Exon 1.1a (A:5-37 | B:6-37)
Exon 1.2 (A:38-74 | B:38-74)
Exon 1.4 (A:74-113 | B:74-113)
Exon 1.6 (A:114-140 | B:114-140)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.4
4: Boundary 1.4/1.6
5: Boundary 1.6/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000350051
1a
ENSE00001305879
chr17:
76210277-76210508
232
BIRC5_HUMAN
1-37
37
2
A:5-37
B:6-37
33
32
1.2
ENST00000350051
2
ENSE00001118173
chr17:
76210761-76210870
110
BIRC5_HUMAN
38-74
37
2
A:38-74
B:38-74
37
37
1.4
ENST00000350051
4
ENSE00000905203
chr17:
76212745-76212862
118
BIRC5_HUMAN
74-113
40
2
A:74-113
B:74-113
40
40
1.6
ENST00000350051
6
ENSE00001706950
chr17:
76219546-76221715
2170
BIRC5_HUMAN
114-142
29
2
A:114-140
B:114-140
27
27
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1f3ha_ (A:)
1b: SCOP_d1f3hb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
Anti-apoptotic protein survivin
(10)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1f3ha_
A:
1b
d1f3hb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1f3hB00 (B:6-140)
1b: CATH_1f3hA00 (A:5-140)
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(
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Homologous Superfamily
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Human (Homo sapiens)
(35)
1a
1f3hB00
B:6-140
1b
1f3hA00
A:5-140
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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