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1F33
Biol. Unit 2
Info
Asym.Unit (314 KB)
Biol.Unit 1 (310 KB)
Biol.Unit 2 (305 KB)
Biol.Unit 3 (310 KB)
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(1)
Title
:
THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN
Authors
:
J. Luo, D. Liu, M. A. White, R. O. Fox
Date
:
31 May 00 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (2x)
Biol. Unit 2: G,H,I,J,K,L (2x)
Biol. Unit 3: A,B,C,D,E,F (2x)
Keywords
:
Dodecamer, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Luo, D. Liu, M. A. White, R. O. Fox
The Structural Basis For Dna Protection By E. Coli Dps Protein
To Be Published
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close entry info
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
1b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
1c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
1d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
1e: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSe)
1f: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSf)
1g: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSg)
1h: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSh)
1i: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSi)
1j: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSj)
1k: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSk)
1l: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
12
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(6, 6)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ASP G:146 , ASP I:146 , ASP K:146
BINDING SITE FOR RESIDUE TRS G 607
2
AC8
SOFTWARE
ALA H:57 , GLU H:167 , GLU I:167 , ALA L:57 , GLU L:167
BINDING SITE FOR RESIDUE TRS L 608
3
AC9
SOFTWARE
GLU H:64 , GLU I:64
BINDING SITE FOR RESIDUE TRS I 609
4
BC1
SOFTWARE
GLU G:64 , GLU K:64 , HOH K:614
BINDING SITE FOR RESIDUE TRS K 610
5
BC2
SOFTWARE
GLU G:167 , GLU J:167 , ALA K:57 , GLU K:167
BINDING SITE FOR RESIDUE TRS K 611
6
BC3
SOFTWARE
ASP H:146 , ASP J:146 , ASP L:146
BINDING SITE FOR RESIDUE TRS J 612
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: DPS_1 (G:51-67,H:51-67,I:51-67,J:51-67,K:...)
2: DPS_2 (G:77-91,H:77-91,I:77-91,J:77-91,K:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPS_1
PS00818
Dps protein family signature 1.
DPS_ECOLI
51-67
12
-
-
-
-
-
-
G:51-67
H:51-67
I:51-67
J:51-67
K:51-67
L:51-67
2
DPS_2
PS00819
Dps protein family signature 2.
DPS_ECOLI
77-91
12
-
-
-
-
-
-
G:77-91
H:77-91
I:77-91
J:77-91
K:77-91
L:77-91
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1f33a_ (A:)
1b: SCOP_d1f33b_ (B:)
1c: SCOP_d1f33c_ (C:)
1d: SCOP_d1f33d_ (D:)
1e: SCOP_d1f33e_ (E:)
1f: SCOP_d1f33f_ (F:)
1g: SCOP_d1f33g_ (G:)
1h: SCOP_d1f33h_ (H:)
1i: SCOP_d1f33i_ (I:)
1j: SCOP_d1f33j_ (J:)
1k: SCOP_d1f33k_ (K:)
1l: SCOP_d1f33l_ (L:)
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)
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(
)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Escherichia coli, Dps [TaxId: 562]
(7)
1a
d1f33a_
A:
1b
d1f33b_
B:
1c
d1f33c_
C:
1d
d1f33d_
D:
1e
d1f33e_
E:
1f
d1f33f_
F:
1g
d1f33g_
G:
1h
d1f33h_
H:
1i
d1f33i_
I:
1j
d1f33j_
J:
1k
d1f33k_
K:
1l
d1f33l_
L:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1f33F00 (F:9-167)
1b: CATH_1f33I00 (I:9-167)
1c: CATH_1f33K00 (K:12-167)
1d: CATH_1f33L00 (L:12-167)
1e: CATH_1f33A00 (A:12-167)
1f: CATH_1f33B00 (B:12-167)
1g: CATH_1f33C00 (C:12-167)
1h: CATH_1f33D00 (D:12-167)
1i: CATH_1f33E00 (E:12-167)
1j: CATH_1f33G00 (G:12-167)
1k: CATH_1f33H00 (H:12-167)
1l: CATH_1f33J00 (J:12-167)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1f33F00
F:9-167
1b
1f33I00
I:9-167
1c
1f33K00
K:12-167
1d
1f33L00
L:12-167
1e
1f33A00
A:12-167
1f
1f33B00
B:12-167
1g
1f33C00
C:12-167
1h
1f33D00
D:12-167
1i
1f33E00
E:12-167
1j
1f33G00
G:12-167
1k
1f33H00
H:12-167
1l
1f33J00
J:12-167
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Asymmetric Unit 2
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (314 KB)
Header - Asym.Unit
Biol.Unit 1 (310 KB)
Header - Biol.Unit 1
Biol.Unit 2 (305 KB)
Header - Biol.Unit 2
Biol.Unit 3 (310 KB)
Header - Biol.Unit 3
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