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1F2I
Biol. Unit 1
Info
Asym.Unit (115 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (37 KB)
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(1)
Title
:
COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA
Authors
:
B. S. Wang, R. A. Grant, C. O. Pabo
Date
:
25 May 00 (Deposition) - 14 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,G,H (1x)
Biol. Unit 2: C,D,I,J (1x)
Biol. Unit 3: E,F,K,L (1x)
Keywords
:
Zinc Finger, Dimer, Protein-Dna Complex, Cooperativity, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Wang, R. A. Grant, C. O. Pabo
Selected Peptide Extension Contacts Hydrophobic Patch On Neighboring Zinc Finger And Mediates Dimerization On Dna.
Nat. Struct. Biol. V. 8 589 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS G:1107 , CYS G:1112 , HIS G:1125 , HIS G:1129
BINDING SITE FOR RESIDUE ZN G 1201
2
AC2
SOFTWARE
CYS G:1137 , CYS G:1140 , HIS G:1153 , HIS G:1157
BINDING SITE FOR RESIDUE ZN G 1202
3
AC3
SOFTWARE
CYS H:2107 , CYS H:2112 , HIS H:2125 , HIS H:2129
BINDING SITE FOR RESIDUE ZN H 2201
4
AC4
SOFTWARE
CYS H:2137 , CYS H:2140 , HIS H:2153 , HIS H:2157
BINDING SITE FOR RESIDUE ZN H 2202
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (G:1107-1129,H:2107-2129,H:2137-215...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
EGR1_MOUSE
338-360
368-388
396-416
4
G:1107-1129
H:2107-2129
-
-
-
-
G:1137-1157
H:2137-2157
-
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1f2ig1 (G:1093-1131)
1b: SCOP_d1f2ig2 (G:1132-1158)
1c: SCOP_d1f2ih1 (H:2093-2131)
1d: SCOP_d1f2ih2 (H:2132-2158)
1e: SCOP_d1f2ii1 (I:3093-3131)
1f: SCOP_d1f2ii2 (I:3132-3158)
1g: SCOP_d1f2ij1 (J:4093-4131)
1h: SCOP_d1f2ij2 (J:4132-4158)
1i: SCOP_d1f2ik1 (K:5096-5131)
1j: SCOP_d1f2ik2 (K:5132-5158)
1k: SCOP_d1f2il1 (L:6093-6131)
1l: SCOP_d1f2il2 (L:6132-6158)
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Protein Domains
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Organisms
(
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(
)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
ZIF268
(14)
Mouse (Mus musculus) [TaxId: 10090]
(14)
1a
d1f2ig1
G:1093-1131
1b
d1f2ig2
G:1132-1158
1c
d1f2ih1
H:2093-2131
1d
d1f2ih2
H:2132-2158
1e
d1f2ii1
I:3093-3131
1f
d1f2ii2
I:3132-3158
1g
d1f2ij1
J:4093-4131
1h
d1f2ij2
J:4132-4158
1i
d1f2ik1
K:5096-5131
1j
d1f2ik2
K:5132-5158
1k
d1f2il1
L:6093-6131
1l
d1f2il2
L:6132-6158
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1f2iG02 (G:1132-1158)
1b: CATH_1f2iH02 (H:2132-2158)
1c: CATH_1f2iI02 (I:3132-3158)
1d: CATH_1f2iJ02 (J:4132-4158)
1e: CATH_1f2iK02 (K:5132-5158)
1f: CATH_1f2iL02 (L:6132-6158)
1g: CATH_1f2iG01 (G:1103-1131)
1h: CATH_1f2iH01 (H:2103-2131)
1i: CATH_1f2iI01 (I:3103-3131)
1j: CATH_1f2iJ01 (J:4103-4131)
1k: CATH_1f2iK01 (K:5103-5131)
1l: CATH_1f2iL01 (L:6103-6131)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Double Stranded RNA Binding Domain
(204)
Homologous Superfamily
:
Classic Zinc Finger
(45)
[unclassified]
(29)
1a
1f2iG02
G:1132-1158
1b
1f2iH02
H:2132-2158
1c
1f2iI02
I:3132-3158
1d
1f2iJ02
J:4132-4158
1e
1f2iK02
K:5132-5158
1f
1f2iL02
L:6132-6158
1g
1f2iG01
G:1103-1131
1h
1f2iH01
H:2103-2131
1i
1f2iI01
I:3103-3131
1j
1f2iJ01
J:4103-4131
1k
1f2iK01
K:5103-5131
1l
1f2iL01
L:6103-6131
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (115 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
Biol.Unit 3 (37 KB)
Header - Biol.Unit 3
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