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1F2I
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (37 KB)
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(1)
Title
:
COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA
Authors
:
B. S. Wang, R. A. Grant, C. O. Pabo
Date
:
25 May 00 (Deposition) - 14 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,G,H (1x)
Biol. Unit 2: C,D,I,J (1x)
Biol. Unit 3: E,F,K,L (1x)
Keywords
:
Zinc Finger, Dimer, Protein-Dna Complex, Cooperativity, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Wang, R. A. Grant, C. O. Pabo
Selected Peptide Extension Contacts Hydrophobic Patch On Neighboring Zinc Finger And Mediates Dimerization On Dna.
Nat. Struct. Biol. V. 8 589 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 12)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
12
Ligand/Ion
ZINC ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS G:1107 , CYS G:1112 , HIS G:1125 , HIS G:1129
BINDING SITE FOR RESIDUE ZN G 1201
02
AC2
SOFTWARE
CYS G:1137 , CYS G:1140 , HIS G:1153 , HIS G:1157
BINDING SITE FOR RESIDUE ZN G 1202
03
AC3
SOFTWARE
CYS H:2107 , CYS H:2112 , HIS H:2125 , HIS H:2129
BINDING SITE FOR RESIDUE ZN H 2201
04
AC4
SOFTWARE
CYS H:2137 , CYS H:2140 , HIS H:2153 , HIS H:2157
BINDING SITE FOR RESIDUE ZN H 2202
05
AC5
SOFTWARE
CYS I:3107 , CYS I:3112 , HIS I:3125 , HIS I:3129
BINDING SITE FOR RESIDUE ZN I 3201
06
AC6
SOFTWARE
CYS I:3137 , CYS I:3140 , HIS I:3153 , HIS I:3157
BINDING SITE FOR RESIDUE ZN I 3202
07
AC7
SOFTWARE
CYS J:4107 , CYS J:4112 , HIS J:4125 , HIS J:4129
BINDING SITE FOR RESIDUE ZN J 4201
08
AC8
SOFTWARE
CYS J:4137 , CYS J:4140 , HIS J:4153 , HIS J:4157
BINDING SITE FOR RESIDUE ZN J 4202
09
AC9
SOFTWARE
CYS K:5107 , CYS K:5112 , HIS K:5125 , HIS K:5129
BINDING SITE FOR RESIDUE ZN K 5201
10
BC1
SOFTWARE
CYS K:5137 , CYS K:5140 , HIS K:5153 , HIS K:5157
BINDING SITE FOR RESIDUE ZN K 5202
11
BC2
SOFTWARE
CYS L:6107 , CYS L:6112 , HIS L:6125 , HIS L:6129
BINDING SITE FOR RESIDUE ZN L 6201
12
BC3
SOFTWARE
CYS L:6137 , CYS L:6140 , HIS L:6153 , HIS L:6157
BINDING SITE FOR RESIDUE ZN L 6202
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (G:1107-1129,H:2107-2129,I:3107-312...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
EGR1_MOUSE
338-360
368-388
396-416
12
G:1107-1129
H:2107-2129
I:3107-3129
J:4107-4129
K:5107-5129
L:6107-6129
G:1137-1157
H:2137-2157
I:3137-3157
J:4137-4157
K:5137-5157
L:6137-6157
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1f2ig1 (G:1093-1131)
1b: SCOP_d1f2ig2 (G:1132-1158)
1c: SCOP_d1f2ih1 (H:2093-2131)
1d: SCOP_d1f2ih2 (H:2132-2158)
1e: SCOP_d1f2ii1 (I:3093-3131)
1f: SCOP_d1f2ii2 (I:3132-3158)
1g: SCOP_d1f2ij1 (J:4093-4131)
1h: SCOP_d1f2ij2 (J:4132-4158)
1i: SCOP_d1f2ik1 (K:5096-5131)
1j: SCOP_d1f2ik2 (K:5132-5158)
1k: SCOP_d1f2il1 (L:6093-6131)
1l: SCOP_d1f2il2 (L:6132-6158)
View:
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Classes
(
)
(
)
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(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
ZIF268
(14)
Mouse (Mus musculus) [TaxId: 10090]
(14)
1a
d1f2ig1
G:1093-1131
1b
d1f2ig2
G:1132-1158
1c
d1f2ih1
H:2093-2131
1d
d1f2ih2
H:2132-2158
1e
d1f2ii1
I:3093-3131
1f
d1f2ii2
I:3132-3158
1g
d1f2ij1
J:4093-4131
1h
d1f2ij2
J:4132-4158
1i
d1f2ik1
K:5096-5131
1j
d1f2ik2
K:5132-5158
1k
d1f2il1
L:6093-6131
1l
d1f2il2
L:6132-6158
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1f2iG02 (G:1132-1158)
1b: CATH_1f2iH02 (H:2132-2158)
1c: CATH_1f2iI02 (I:3132-3158)
1d: CATH_1f2iJ02 (J:4132-4158)
1e: CATH_1f2iK02 (K:5132-5158)
1f: CATH_1f2iL02 (L:6132-6158)
1g: CATH_1f2iG01 (G:1103-1131)
1h: CATH_1f2iH01 (H:2103-2131)
1i: CATH_1f2iI01 (I:3103-3131)
1j: CATH_1f2iJ01 (J:4103-4131)
1k: CATH_1f2iK01 (K:5103-5131)
1l: CATH_1f2iL01 (L:6103-6131)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Double Stranded RNA Binding Domain
(204)
Homologous Superfamily
:
Classic Zinc Finger
(45)
[unclassified]
(29)
1a
1f2iG02
G:1132-1158
1b
1f2iH02
H:2132-2158
1c
1f2iI02
I:3132-3158
1d
1f2iJ02
J:4132-4158
1e
1f2iK02
K:5132-5158
1f
1f2iL02
L:6132-6158
1g
1f2iG01
G:1103-1131
1h
1f2iH01
H:2103-2131
1i
1f2iI01
I:3103-3131
1j
1f2iJ01
J:4103-4131
1k
1f2iK01
K:5103-5131
1l
1f2iL01
L:6103-6131
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (115 KB)
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