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1F2E
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (130 KB)
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(1)
Title
:
STRUCTURE OF SPHINGOMONAD, GLUTATHIONE S-TRANSFERASE COMPLEXED WITH GLUTATHIONE
Authors
:
T. Nishio, T. Watanabe, A. Patel, Y. Wang, P. C. K. Lau, P. Grochulski, Y. M. Cygler
Date
:
24 May 00 (Deposition) - 21 Jun 00 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Gst Complexed With Glutathione, Thioredoxin Superfamily Fold, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Nishio, T. Watanabe, A. Patel, Y. Wang, P. C. K. Lau, P. Grochulski, Y. Li, M. Cygler
Properties Of A Sphingomonad And Marine Bacterium Beta-Clas Glutathione S-Transferases And Crystal Structure Of The Former Complex With Glutathione
To Be Published
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
1d: GLUTATHIONE (GSHd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GSH
4
Ligand/Ion
GLUTATHIONE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:10 , LYS A:51 , VAL A:52 , GLU A:65 , ASN A:66 , HIS A:106 , HOH A:223 , HOH A:336 , HOH A:339 , SER B:103 , GLU B:104 , HOH B:213
BINDING SITE FOR RESIDUE GSH A 210
2
AC2
SOFTWARE
GLU A:104 , CYS B:10 , LEU B:32 , LYS B:51 , VAL B:52 , GLU B:65 , ASN B:66 , HIS B:106 , HOH B:212
BINDING SITE FOR RESIDUE GSH B 210
3
AC3
SOFTWARE
CYS C:10 , LEU C:32 , LYS C:51 , VAL C:52 , GLU C:65 , ASN C:66 , PRO C:67 , HIS C:106 , HOH C:293 , GLU D:104 , HOH D:221
BINDING SITE FOR RESIDUE GSH C 210
4
AC4
SOFTWARE
HOH A:315 , SER C:103 , GLU C:104 , HOH C:298 , CYS D:10 , LEU D:32 , ARG D:35 , LYS D:51 , VAL D:52 , GLU D:65 , ASN D:66 , PRO D:67 , HIS D:106 , HOH D:220 , HOH D:236
BINDING SITE FOR RESIDUE GSH D 210
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1f2ea1 (A:81-201)
1b: SCOP_d1f2eb1 (B:81-201)
1c: SCOP_d1f2ec1 (C:81-201)
1d: SCOP_d1f2ed1 (D:81-201)
2a: SCOP_d1f2ea2 (A:1-80)
2b: SCOP_d1f2eb2 (B:1-80)
2c: SCOP_d1f2ec2 (C:1-80)
2d: SCOP_d1f2ed2 (D:1-80)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class beta GST
(8)
Sphingomonas paucimobilis [TaxId: 13689]
(1)
1a
d1f2ea1
A:81-201
1b
d1f2eb1
B:81-201
1c
d1f2ec1
C:81-201
1d
d1f2ed1
D:81-201
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class beta GST
(8)
Sphingomonas paucimobilis [TaxId: 13689]
(1)
2a
d1f2ea2
A:1-80
2b
d1f2eb2
B:1-80
2c
d1f2ec2
C:1-80
2d
d1f2ed2
D:1-80
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1f2eA01 (A:1-82,A:189-201)
1b: CATH_1f2eB01 (B:1-82,B:189-201)
1c: CATH_1f2eC01 (C:1-82,C:189-201)
1d: CATH_1f2eD01 (D:1-82,D:189-201)
2a: CATH_1f2eA02 (A:83-188)
2b: CATH_1f2eB02 (B:83-188)
2c: CATH_1f2eC02 (C:83-188)
2d: CATH_1f2eD02 (D:83-188)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Sphingomonas paucimobilis. Organism_taxid: 13689.
(1)
1a
1f2eA01
A:1-82,A:189-201
1b
1f2eB01
B:1-82,B:189-201
1c
1f2eC01
C:1-82,C:189-201
1d
1f2eD01
D:1-82,D:189-201
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Sphingomonas paucimobilis. Organism_taxid: 13689.
(1)
2a
1f2eA02
A:83-188
2b
1f2eB02
B:83-188
2c
1f2eC02
C:83-188
2d
1f2eD02
D:83-188
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (134 KB)
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