PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1F1H
Asym. Unit
Info
Asym.Unit (937 KB)
Biol.Unit 1 (921 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM WITH THALLIUM IONS
Authors
:
H. S. Gill, D. Eisenberg
Date
:
19 May 00 (Deposition) - 04 Apr 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.67
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Glutamine Synthetase, Thallium Ions, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. S. Gill, D. Eisenberg
The Crystal Structure Of Phosphinothricin In The Active Site Of Glutamine Synthetase Illuminates The Mechanism Of Enzymatic Inhibition.
Biochemistry V. 40 1903 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 72)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
1i: ADENOSINE-5'-DIPHOSPHATE (ADPi)
1j: ADENOSINE-5'-DIPHOSPHATE (ADPj)
1k: ADENOSINE-5'-DIPHOSPHATE (ADPk)
1l: ADENOSINE-5'-DIPHOSPHATE (ADPl)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
2m: MANGANESE (II) ION (MNm)
2n: MANGANESE (II) ION (MNn)
2o: MANGANESE (II) ION (MNo)
2p: MANGANESE (II) ION (MNp)
2q: MANGANESE (II) ION (MNq)
2r: MANGANESE (II) ION (MNr)
2s: MANGANESE (II) ION (MNs)
2t: MANGANESE (II) ION (MNt)
2u: MANGANESE (II) ION (MNu)
2v: MANGANESE (II) ION (MNv)
2w: MANGANESE (II) ION (MNw)
2x: MANGANESE (II) ION (MNx)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
3i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
3k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
3l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
4a: THALLIUM (I) ION (TLa)
4b: THALLIUM (I) ION (TLb)
4c: THALLIUM (I) ION (TLc)
4d: THALLIUM (I) ION (TLd)
4e: THALLIUM (I) ION (TLe)
4f: THALLIUM (I) ION (TLf)
4g: THALLIUM (I) ION (TLg)
4h: THALLIUM (I) ION (TLh)
4i: THALLIUM (I) ION (TLi)
4j: THALLIUM (I) ION (TLj)
4k: THALLIUM (I) ION (TLk)
4l: THALLIUM (I) ION (TLl)
4m: THALLIUM (I) ION (TLm)
4n: THALLIUM (I) ION (TLn)
4o: THALLIUM (I) ION (TLo)
4p: THALLIUM (I) ION (TLp)
4q: THALLIUM (I) ION (TLq)
4r: THALLIUM (I) ION (TLr)
4s: THALLIUM (I) ION (TLs)
4t: THALLIUM (I) ION (TLt)
4u: THALLIUM (I) ION (TLu)
4v: THALLIUM (I) ION (TLv)
4w: THALLIUM (I) ION (TLw)
4x: THALLIUM (I) ION (TLx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
12
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MN
24
Ligand/Ion
MANGANESE (II) ION
3
MPD
12
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
TL
24
Ligand/Ion
THALLIUM (I) ION
[
close Hetero Component info
]
Sites
(72, 72)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:131 , GLU A:212 , GLU A:220 , ADP A:1471 , HOH A:1550 , HOH A:1583
BINDING SITE FOR RESIDUE MN A 469
02
AC2
SOFTWARE
GLU A:129 , HIS A:269 , GLU A:357 , HOH A:1582 , HOH B:1490
BINDING SITE FOR RESIDUE MN A 470
03
AC3
SOFTWARE
GLU B:131 , GLU B:212 , GLU B:220 , ADP B:1472 , HOH B:1558 , HOH B:1590
BINDING SITE FOR RESIDUE MN B 469
04
AC4
SOFTWARE
GLU B:129 , HIS B:269 , GLU B:357 , HOH B:1589 , HOH C:1492
BINDING SITE FOR RESIDUE MN B 470
05
AC5
SOFTWARE
GLU C:131 , GLU C:212 , GLU C:220 , ADP C:1473 , HOH C:1560 , HOH D:1494
BINDING SITE FOR RESIDUE MN C 469
06
AC6
SOFTWARE
GLU C:129 , HIS C:269 , GLU C:357 , HOH C:1590 , HOH D:1493
BINDING SITE FOR RESIDUE MN C 470
07
AC7
SOFTWARE
GLU D:131 , GLU D:212 , GLU D:220 , ADP D:1474 , HOH D:1562 , HOH D:1595
BINDING SITE FOR RESIDUE MN D 469
08
AC8
SOFTWARE
GLU D:129 , HIS D:269 , GLU D:357 , HOH D:1594 , HOH E:1493
BINDING SITE FOR RESIDUE MN D 470
09
AC9
SOFTWARE
GLU E:131 , GLU E:212 , GLU E:220 , ADP E:1475 , HOH E:1560 , HOH E:1592
BINDING SITE FOR RESIDUE MN E 469
10
BC1
SOFTWARE
GLU E:129 , HIS E:269 , GLU E:357 , HOH E:1591 , HOH F:1496
BINDING SITE FOR RESIDUE MN E 470
11
BC2
SOFTWARE
GLU F:131 , GLU F:212 , GLU F:220 , ADP F:1476 , HOH F:1565 , HOH F:1597
BINDING SITE FOR RESIDUE MN F 469
12
BC3
SOFTWARE
HOH A:1596 , GLU F:129 , HIS F:269 , GLU F:357 , HOH F:1596
BINDING SITE FOR RESIDUE MN F 470
13
BC4
SOFTWARE
GLU G:131 , GLU G:212 , GLU G:220 , ADP G:1477 , HOH G:1565 , HOH G:1597
BINDING SITE FOR RESIDUE MN G 469
14
BC5
SOFTWARE
GLU G:129 , HIS G:269 , GLU G:357 , HOH G:1596 , HOH L:838
BINDING SITE FOR RESIDUE MN G 470
15
BC6
SOFTWARE
GLU H:131 , GLU H:212 , GLU H:220 , ADP H:1478 , HOH H:1565 , HOH H:1597
BINDING SITE FOR RESIDUE MN H 469
16
BC7
SOFTWARE
HOH G:1609 , GLU H:129 , HIS H:269 , GLU H:357 , HOH H:1596
BINDING SITE FOR RESIDUE MN H 470
17
BC8
SOFTWARE
GLU I:131 , GLU I:212 , GLU I:220 , ADP I:1479 , HOH I:1567 , HOH I:1599
BINDING SITE FOR RESIDUE MN I 469
18
BC9
SOFTWARE
HOH H:1611 , GLU I:129 , HIS I:269 , GLU I:357 , HOH I:1598
BINDING SITE FOR RESIDUE MN I 470
19
CC1
SOFTWARE
GLU J:131 , GLU J:212 , GLU J:220 , ADP J:1480 , HOH J:1567 , HOH J:1598
BINDING SITE FOR RESIDUE MN J 469
20
CC2
SOFTWARE
HOH I:1613 , GLU J:129 , HIS J:269 , GLU J:357 , HOH J:1597
BINDING SITE FOR RESIDUE MN J 470
21
CC3
SOFTWARE
GLU K:131 , GLU K:212 , GLU K:220 , ADP K:1481 , HOH K:1570 , HOH K:1602
BINDING SITE FOR RESIDUE MN K 469
22
CC4
SOFTWARE
HOH J:1612 , GLU K:129 , HIS K:269 , GLU K:357 , HOH K:1601
BINDING SITE FOR RESIDUE MN K 470
23
CC5
SOFTWARE
GLU L:131 , GLU L:212 , GLU L:220 , HOH L:1406 , HOH L:1445 , ADP L:1482
BINDING SITE FOR RESIDUE MN L 469
24
CC6
SOFTWARE
HOH K:1616 , GLU L:129 , HIS L:269 , GLU L:357 , HOH L:1444
BINDING SITE FOR RESIDUE MN L 470
25
CC7
SOFTWARE
GLU A:129 , GLU A:207 , HIS A:210 , GLU A:220 , THR A:223 , PHE A:225 , HIS A:271 , SER A:273 , ARG A:355 , MN A:469 , HOH A:1487 , HOH A:1550 , HOH A:1583 , ASP B:50
BINDING SITE FOR RESIDUE ADP A 1471
26
CC8
SOFTWARE
GLU B:129 , GLU B:207 , HIS B:210 , GLU B:220 , THR B:223 , PHE B:225 , HIS B:271 , SER B:273 , ARG B:355 , MN B:469 , HOH B:1494 , HOH B:1558 , HOH B:1590 , ASP C:50
BINDING SITE FOR RESIDUE ADP B 1472
27
CC9
SOFTWARE
GLU C:129 , GLU C:207 , HIS C:210 , GLU C:220 , THR C:223 , PHE C:225 , HIS C:271 , SER C:273 , ARG C:355 , MN C:469 , HOH C:1496 , HOH C:1560 , ASP D:50 , HOH D:1494
BINDING SITE FOR RESIDUE ADP C 1473
28
DC1
SOFTWARE
GLU D:129 , GLU D:207 , HIS D:210 , GLU D:220 , THR D:223 , PHE D:225 , HIS D:271 , SER D:273 , ARG D:355 , MN D:469 , HOH D:1498 , HOH D:1562 , HOH D:1595 , ASP E:50
BINDING SITE FOR RESIDUE ADP D 1474
29
DC2
SOFTWARE
GLU E:129 , GLU E:207 , HIS E:210 , GLU E:220 , THR E:223 , PHE E:225 , HIS E:271 , SER E:273 , ARG E:355 , MN E:469 , HOH E:1497 , HOH E:1560 , HOH E:1592 , ASP F:50
BINDING SITE FOR RESIDUE ADP E 1475
30
DC3
SOFTWARE
ASP A:50 , GLU F:129 , GLU F:207 , HIS F:210 , GLU F:220 , THR F:223 , PHE F:225 , HIS F:271 , SER F:273 , ARG F:355 , MN F:469 , HOH F:1500 , HOH F:1565 , HOH F:1597
BINDING SITE FOR RESIDUE ADP F 1476
31
DC4
SOFTWARE
GLU G:129 , GLU G:207 , HIS G:210 , GLU G:220 , THR G:223 , PHE G:225 , HIS G:271 , SER G:273 , ARG G:355 , MN G:469 , HOH G:1501 , HOH G:1565 , HOH G:1597 , ASP L:50
BINDING SITE FOR RESIDUE ADP G 1477
32
DC5
SOFTWARE
ASP G:50 , GLU H:129 , GLU H:207 , HIS H:210 , GLU H:220 , THR H:223 , PHE H:225 , HIS H:271 , SER H:273 , ARG H:355 , MN H:469 , HOH H:1500 , HOH H:1565 , HOH H:1597
BINDING SITE FOR RESIDUE ADP H 1478
33
DC6
SOFTWARE
ASP H:50 , GLU I:129 , GLU I:207 , HIS I:210 , GLU I:220 , THR I:223 , PHE I:225 , HIS I:271 , SER I:273 , ARG I:355 , MN I:469 , HOH I:1503 , HOH I:1567 , HOH I:1599
BINDING SITE FOR RESIDUE ADP I 1479
34
DC7
SOFTWARE
ASP I:50 , GLU J:129 , GLU J:207 , HIS J:210 , GLU J:220 , THR J:223 , PHE J:225 , HIS J:271 , SER J:273 , ARG J:355 , MN J:469 , HOH J:1503 , HOH J:1567 , HOH J:1598
BINDING SITE FOR RESIDUE ADP J 1480
35
DC8
SOFTWARE
ASP J:50 , GLU K:129 , GLU K:207 , HIS K:210 , GLU K:220 , THR K:223 , PHE K:225 , HIS K:271 , SER K:273 , ARG K:355 , MN K:469 , HOH K:1507 , HOH K:1570 , HOH K:1602
BINDING SITE FOR RESIDUE ADP K 1481
36
DC9
SOFTWARE
ASP K:50 , GLU L:129 , GLU L:207 , HIS L:210 , GLU L:220 , THR L:223 , PHE L:225 , HIS L:271 , SER L:273 , ARG L:355 , MN L:469 , HOH L:1336 , HOH L:1406 , HOH L:1445
BINDING SITE FOR RESIDUE ADP L 1482
37
EC1
SOFTWARE
TYR A:179 , GLU A:212 , ASP B:50 , SER B:53
BINDING SITE FOR RESIDUE TL A 473
38
EC2
SOFTWARE
GLU A:131 , ASN A:264 , GLY A:265 , HOH A:1584
BINDING SITE FOR RESIDUE TL A 474
39
EC3
SOFTWARE
TYR B:179 , GLU B:212 , ASP C:50 , SER C:53
BINDING SITE FOR RESIDUE TL B 473
40
EC4
SOFTWARE
GLU B:131 , ASN B:264 , GLY B:265 , HOH B:1591
BINDING SITE FOR RESIDUE TL B 474
41
EC5
SOFTWARE
TYR C:179 , GLU C:212 , ASP D:50 , SER D:53
BINDING SITE FOR RESIDUE TL C 473
42
EC6
SOFTWARE
GLU C:131 , ASN C:264 , GLY C:265 , HOH C:1591
BINDING SITE FOR RESIDUE TL C 474
43
EC7
SOFTWARE
TYR D:179 , GLU D:212 , ASP E:50 , SER E:53
BINDING SITE FOR RESIDUE TL D 473
44
EC8
SOFTWARE
GLU D:131 , ASN D:264 , GLY D:265 , HOH D:1596
BINDING SITE FOR RESIDUE TL D 474
45
EC9
SOFTWARE
TYR E:179 , GLU E:212 , ASP F:50 , SER F:53
BINDING SITE FOR RESIDUE TL E 473
46
FC1
SOFTWARE
GLU E:131 , ASN E:264 , GLY E:265 , HOH E:1593
BINDING SITE FOR RESIDUE TL E 474
47
FC2
SOFTWARE
ASP A:50 , SER A:53 , TYR F:179 , GLU F:212
BINDING SITE FOR RESIDUE TL F 473
48
FC3
SOFTWARE
GLU F:131 , ASN F:264 , GLY F:265 , HOH F:1598
BINDING SITE FOR RESIDUE TL F 474
49
FC4
SOFTWARE
TYR G:179 , GLU G:212 , ASP L:50 , SER L:53
BINDING SITE FOR RESIDUE TL G 473
50
FC5
SOFTWARE
GLU G:131 , ASN G:264 , GLY G:265 , HOH G:1598
BINDING SITE FOR RESIDUE TL G 474
51
FC6
SOFTWARE
ASP G:50 , SER G:53 , TYR H:179 , GLU H:212
BINDING SITE FOR RESIDUE TL H 473
52
FC7
SOFTWARE
GLU H:131 , ASN H:264 , GLY H:265 , HOH H:1598
BINDING SITE FOR RESIDUE TL H 474
53
FC8
SOFTWARE
ASP H:50 , SER H:53 , TYR I:179 , GLU I:212
BINDING SITE FOR RESIDUE TL I 473
54
FC9
SOFTWARE
GLU I:131 , ASN I:264 , GLY I:265 , HOH I:1600
BINDING SITE FOR RESIDUE TL I 474
55
GC1
SOFTWARE
ASP I:50 , SER I:53 , TYR J:179 , GLU J:212
BINDING SITE FOR RESIDUE TL J 473
56
GC2
SOFTWARE
GLU J:131 , ASN J:264 , GLY J:265 , HOH J:1599
BINDING SITE FOR RESIDUE TL J 474
57
GC3
SOFTWARE
ASP J:50 , SER J:53 , TYR K:179 , GLU K:212
BINDING SITE FOR RESIDUE TL K 473
58
GC4
SOFTWARE
GLU K:131 , ASN K:264 , GLY K:265 , HOH K:1603
BINDING SITE FOR RESIDUE TL K 474
59
GC5
SOFTWARE
ASP K:50 , SER K:53 , TYR L:179 , GLU L:212
BINDING SITE FOR RESIDUE TL L 473
60
GC6
SOFTWARE
GLU L:131 , ASN L:264 , GLY L:265 , HOH L:1446
BINDING SITE FOR RESIDUE TL L 474
61
GC7
SOFTWARE
PHE A:16 , PHE A:80 , ALA A:81 , ASP A:82 , THR A:84 , GLN F:189 , ASP F:190 , SER F:193
BINDING SITE FOR RESIDUE MPD A 1483
62
GC8
SOFTWARE
GLN A:189 , ASP A:190 , SER A:193 , PHE B:16 , PHE B:80 , ALA B:81 , ASP B:82 , THR B:84
BINDING SITE FOR RESIDUE MPD B 1484
63
GC9
SOFTWARE
GLN B:189 , ASP B:190 , SER B:193 , PHE C:16 , PHE C:80 , ALA C:81 , ASP C:82 , THR C:84
BINDING SITE FOR RESIDUE MPD C 1485
64
HC1
SOFTWARE
GLN C:189 , ASP C:190 , SER C:193 , PHE D:16 , PHE D:80 , ALA D:81 , ASP D:82 , THR D:84
BINDING SITE FOR RESIDUE MPD D 1486
65
HC2
SOFTWARE
GLN D:189 , ASP D:190 , SER D:193 , PHE E:16 , PHE E:80 , ALA E:81 , ASP E:82 , THR E:84
BINDING SITE FOR RESIDUE MPD E 1487
66
HC3
SOFTWARE
GLN E:189 , ASP E:190 , SER E:193 , PHE F:16 , PHE F:80 , ALA F:81 , ASP F:82 , THR F:84
BINDING SITE FOR RESIDUE MPD F 1488
67
HC4
SOFTWARE
PHE G:16 , PHE G:80 , ALA G:81 , ASP G:82 , THR G:84 , GLN H:189 , ASP H:190 , SER H:193
BINDING SITE FOR RESIDUE MPD G 1489
68
HC5
SOFTWARE
PHE H:16 , PHE H:80 , ALA H:81 , ASP H:82 , THR H:84 , HOH H:1606 , GLN I:189 , ASP I:190 , SER I:193
BINDING SITE FOR RESIDUE MPD H 1490
69
HC6
SOFTWARE
PHE I:16 , PHE I:80 , ALA I:81 , ASP I:82 , THR I:84 , GLN J:189 , ASP J:190 , SER J:193
BINDING SITE FOR RESIDUE MPD I 1491
70
HC7
SOFTWARE
PHE J:16 , PHE J:80 , ALA J:81 , ASP J:82 , THR J:84 , GLN K:189 , ASP K:190 , SER K:193
BINDING SITE FOR RESIDUE MPD J 1492
71
HC8
SOFTWARE
PHE K:16 , PHE K:80 , ALA K:81 , ASP K:82 , THR K:84 , GLN L:189 , ASP L:190 , SER L:193
BINDING SITE FOR RESIDUE MPD K 1493
72
HC9
SOFTWARE
GLN G:189 , ASP G:190 , SER G:193 , PHE L:16 , PHE L:80 , ALA L:81 , ASP L:82 , THR L:84 , HOH L:733
BINDING SITE FOR RESIDUE MPD L 1494
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 36)
Info
All PROSITE Patterns/Profiles
1: GLNA_1 (A:49-67,B:49-67,C:49-67,D:49-67,E:...)
2: GLNA_ATP (A:258-273,B:258-273,C:258-273,D:25...)
3: GLNA_ADENYLATION (A:385-397,B:385-397,C:385-397,D:38...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLNA_1
PS00180
Glutamine synthetase signature 1.
GLN1B_SALTY
50-68
12
A:49-67
B:49-67
C:49-67
D:49-67
E:49-67
F:49-67
G:49-67
H:49-67
I:49-67
J:49-67
K:49-67
L:49-67
2
GLNA_ATP
PS00181
Glutamine synthetase putative ATP-binding region signature.
GLN1B_SALTY
259-274
12
A:258-273
B:258-273
C:258-273
D:258-273
E:258-273
F:258-273
G:258-273
H:258-273
I:258-273
J:258-273
K:258-273
L:258-273
3
GLNA_ADENYLATION
PS00182
Glutamine synthetase class-I adenylation site.
GLN1B_SALTY
386-398
12
A:385-397
B:385-397
C:385-397
D:385-397
E:385-397
F:385-397
G:385-397
H:385-397
I:385-397
J:385-397
K:385-397
L:385-397
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d1f1ha1 (A:1-100)
1b: SCOP_d1f1hb1 (B:1-100)
1c: SCOP_d1f1hc1 (C:1-100)
1d: SCOP_d1f1hd1 (D:1-100)
1e: SCOP_d1f1he1 (E:1-100)
1f: SCOP_d1f1hf1 (F:1-100)
1g: SCOP_d1f1hg1 (G:1-100)
1h: SCOP_d1f1hh1 (H:1-100)
1i: SCOP_d1f1hi1 (I:1-100)
1j: SCOP_d1f1hj1 (J:1-100)
1k: SCOP_d1f1hk1 (K:1-100)
1l: SCOP_d1f1hl1 (L:1-100)
2a: SCOP_d1f1ha2 (A:101-468)
2b: SCOP_d1f1hb2 (B:101-468)
2c: SCOP_d1f1hc2 (C:101-468)
2d: SCOP_d1f1hd2 (D:101-468)
2e: SCOP_d1f1he2 (E:101-468)
2f: SCOP_d1f1hf2 (F:101-468)
2g: SCOP_d1f1hg2 (G:101-468)
2h: SCOP_d1f1hh2 (H:101-468)
2i: SCOP_d1f1hi2 (I:101-468)
2j: SCOP_d1f1hj2 (J:101-468)
2k: SCOP_d1f1hk2 (K:101-468)
2l: SCOP_d1f1hl2 (L:101-468)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
Glutamine synthetase, N-terminal domain
(8)
Protein domain
:
Glutamine synthetase, N-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
1a
d1f1ha1
A:1-100
1b
d1f1hb1
B:1-100
1c
d1f1hc1
C:1-100
1d
d1f1hd1
D:1-100
1e
d1f1he1
E:1-100
1f
d1f1hf1
F:1-100
1g
d1f1hg1
G:1-100
1h
d1f1hh1
H:1-100
1i
d1f1hi1
I:1-100
1j
d1f1hj1
J:1-100
1k
d1f1hk1
K:1-100
1l
d1f1hl1
L:1-100
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Glutamine synthetase catalytic domain
(8)
Protein domain
:
Glutamine synthetase, C-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
2a
d1f1ha2
A:101-468
2b
d1f1hb2
B:101-468
2c
d1f1hc2
C:101-468
2d
d1f1hd2
D:101-468
2e
d1f1he2
E:101-468
2f
d1f1hf2
F:101-468
2g
d1f1hg2
G:101-468
2h
d1f1hh2
H:101-468
2i
d1f1hi2
I:101-468
2j
d1f1hj2
J:101-468
2k
d1f1hk2
K:101-468
2l
d1f1hl2
L:101-468
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_1f1hA01 (A:104-456)
1b: CATH_1f1hB01 (B:104-456)
1c: CATH_1f1hK01 (K:104-456)
1d: CATH_1f1hL01 (L:104-456)
1e: CATH_1f1hC01 (C:104-456)
1f: CATH_1f1hD01 (D:104-456)
1g: CATH_1f1hE01 (E:104-456)
1h: CATH_1f1hF01 (F:104-456)
1i: CATH_1f1hG01 (G:104-456)
1j: CATH_1f1hH01 (H:104-456)
1k: CATH_1f1hI01 (I:104-456)
1l: CATH_1f1hJ01 (J:104-456)
2a: CATH_1f1hA02 (A:1-103)
2b: CATH_1f1hB02 (B:1-103)
2c: CATH_1f1hK02 (K:1-103)
2d: CATH_1f1hL02 (L:1-103)
2e: CATH_1f1hC02 (C:1-103)
2f: CATH_1f1hD02 (D:1-103)
2g: CATH_1f1hE02 (E:1-103)
2h: CATH_1f1hF02 (F:1-103)
2i: CATH_1f1hG02 (G:1-103)
2j: CATH_1f1hH02 (H:1-103)
2k: CATH_1f1hI02 (I:1-103)
2l: CATH_1f1hJ02 (J:1-103)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Salmonella typhimurium. Organism_taxid: 602.
(1)
1a
1f1hA01
A:104-456
1b
1f1hB01
B:104-456
1c
1f1hK01
K:104-456
1d
1f1hL01
L:104-456
1e
1f1hC01
C:104-456
1f
1f1hD01
D:104-456
1g
1f1hE01
E:104-456
1h
1f1hF01
F:104-456
1i
1f1hG01
G:104-456
1j
1f1hH01
H:104-456
1k
1f1hI01
I:104-456
1l
1f1hJ01
J:104-456
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.70, no name defined]
(11)
Salmonella typhimurium. Organism_taxid: 602.
(1)
2a
1f1hA02
A:1-103
2b
1f1hB02
B:1-103
2c
1f1hK02
K:1-103
2d
1f1hL02
L:1-103
2e
1f1hC02
C:1-103
2f
1f1hD02
D:1-103
2g
1f1hE02
E:1-103
2h
1f1hF02
F:1-103
2i
1f1hG02
G:1-103
2j
1f1hH02
H:1-103
2k
1f1hI02
I:1-103
2l
1f1hJ02
J:1-103
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (937 KB)
Header - Asym.Unit
Biol.Unit 1 (921 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1F1H
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help