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1F0V
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (28 KB)
Biol.Unit 3 (27 KB)
Biol.Unit 4 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN RNASE A DIMER DISPLAYING A NEW TYPE OF 3D DOMAIN SWAPPING
Authors
:
Y. S. Liu, G. Gotte, M. Libonati, D. S. Eisenberg
Date
:
17 May 00 (Deposition) - 21 Feb 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,M,N,O,P
Biol. Unit 1: A,M (1x)
Biol. Unit 2: B,N (1x)
Biol. Unit 3: C,O (1x)
Biol. Unit 4: D,P (1x)
Keywords
:
Domain Swapping, Crystal, Ribonuclease, Bovine Pancreas, Hydrolase- Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. S. Liu, G. Gotte, M. Libonati, D. S. Eisenberg
A Domain-Swapped Rnase A Dimer With Implications For Amyloi Formation
Nat. Struct. Biol. V. 8 211 2001
[
close entry info
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
24
Ligand/Ion
GLYCEROL
2
PO4
4
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:11 , HIS A:12 , LYS A:41 , HOH A:1004 , HOH A:1252 , HOH A:1553 , HIS B:319 , PHE B:320 , DG M:752
BINDING SITE FOR RESIDUE PO4 A 801
02
AC2
SOFTWARE
HIS A:119 , PHE A:120 , GLN B:211 , HIS B:212 , LYS B:241 , HOH B:1074 , HOH B:1396 , HOH B:1554 , HOH B:1555 , DG N:754
BINDING SITE FOR RESIDUE PO4 B 802
03
AC3
SOFTWARE
GLN C:411 , HIS C:412 , LYS C:441 , HOH C:1045 , HOH C:1571 , HIS D:719 , PHE D:720 , DG O:756
BINDING SITE FOR RESIDUE PO4 C 803
04
AC4
SOFTWARE
HIS C:519 , PHE C:520 , GLN D:611 , HIS D:612 , LYS D:641 , DG P:758 , HOH P:1029 , HOH P:1273
BINDING SITE FOR RESIDUE PO4 P 804
05
AC5
SOFTWARE
ALA C:405 , GLU C:511 , ASN D:713 , PRO D:714 , HOH D:1051 , HOH D:1254 , HOH D:1355 , HOH D:1575 , HOH D:1576
BINDING SITE FOR RESIDUE GOL D 901
06
AC6
SOFTWARE
GLN B:301 , ALA B:302 , ASN B:303 , HOH B:1442
BINDING SITE FOR RESIDUE GOL B 902
07
AC7
SOFTWARE
PRO C:442 , HOH C:1179
BINDING SITE FOR RESIDUE GOL C 903
08
AC8
SOFTWARE
GLN A:69 , THR A:70
BINDING SITE FOR RESIDUE GOL A 904
09
AC9
SOFTWARE
GLU B:202 , ALA B:206 , GLU B:209 , ARG B:210 , GOL B:922 , HOH B:1307 , HOH B:1514
BINDING SITE FOR RESIDUE GOL B 905
10
BC1
SOFTWARE
SER B:223 , THR B:299 , THR B:300 , GLN B:301
BINDING SITE FOR RESIDUE GOL B 906
11
BC2
SOFTWARE
VAL A:124 , VAL B:263 , ALA B:264 , GLN B:274 , ILE B:307 , HOH B:1192
BINDING SITE FOR RESIDUE GOL B 907
12
BC3
SOFTWARE
SER A:50 , ALA A:52 , ASP A:53
BINDING SITE FOR RESIDUE GOL A 908
13
BC4
SOFTWARE
GLU D:711 , GLY D:712 , ASN D:713 , HOH D:1303 , HOH D:1581 , HOH D:1582
BINDING SITE FOR RESIDUE GOL D 909
14
BC5
SOFTWARE
ASN A:113 , PRO A:114 , VAL A:116 , GLU B:311 , GLY B:312 , ASN B:313 , GOL B:920 , HOH B:1056 , HOH B:1123
BINDING SITE FOR RESIDUE GOL B 910
15
BC6
SOFTWARE
ASN C:503 , GOL C:912
BINDING SITE FOR RESIDUE GOL A 911
16
BC7
SOFTWARE
THR A:78 , GOL A:911 , THR C:478 , ASN C:503 , HOH C:1157
BINDING SITE FOR RESIDUE GOL C 912
17
BC8
SOFTWARE
GLN D:701 , ALA D:702 , ASN D:703 , HOH D:1509
BINDING SITE FOR RESIDUE GOL D 913
18
BC9
SOFTWARE
ARG B:239 , CYS B:240 , LYS B:241 , PRO B:242
BINDING SITE FOR RESIDUE GOL B 914
19
CC1
SOFTWARE
ARG A:39 , PRO A:42 , HOH A:1330
BINDING SITE FOR RESIDUE GOL A 915
20
CC2
SOFTWARE
SER D:623 , THR D:699 , THR D:700 , GLN D:701 , HOH D:1281
BINDING SITE FOR RESIDUE GOL D 916
21
CC3
SOFTWARE
SER C:422 , THR C:499 , THR C:500 , GLN C:501
BINDING SITE FOR RESIDUE GOL C 917
22
CC4
SOFTWARE
SER A:23 , THR A:99 , HOH A:1062
BINDING SITE FOR RESIDUE GOL A 918
23
CC5
SOFTWARE
SER C:450 , ASP C:453 , HOH C:1437
BINDING SITE FOR RESIDUE GOL C 919
24
CC6
SOFTWARE
ALA B:204 , GLU B:311 , ASN B:313 , GOL B:910 , HOH B:1332 , HOH B:1494
BINDING SITE FOR RESIDUE GOL B 920
25
CC7
SOFTWARE
ALA B:256 , SER B:259 , GLN B:260 , HOH B:1010 , HOH B:1348 , HOH B:1431
BINDING SITE FOR RESIDUE GOL B 921
26
CC8
SOFTWARE
GLU B:202 , ARG B:210 , ASN B:234 , GOL B:905 , HOH B:1269
BINDING SITE FOR RESIDUE GOL B 922
27
CC9
SOFTWARE
SER A:77 , HOH A:1140 , HOH A:1579 , THR C:478 , HIS C:505
BINDING SITE FOR RESIDUE GOL A 923
28
DC1
SOFTWARE
ASP D:653 , ALA D:656 , HOH D:1021 , HOH D:1028
BINDING SITE FOR RESIDUE GOL D 924
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RNASE_PANCREATIC (A:40-46,B:240-246,C:440-446,D:640-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_PANCREATIC
PS00127
Pancreatic ribonuclease family signature.
RNAS1_BOVIN
66-72
4
A:40-46
B:240-246
C:440-446
D:640-646
[
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]
Exons
(1, 4)
Info
All Exons
Exon 1.2 (A:1-124 | B:201-324 | C:401-524 | ...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000011586
1
ENSBTAE00000400684
chr10:
25757929-25757973
45
RNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000011586
2
ENSBTAE00000093931
chr10:
25758709-25759510
802
RNAS1_BOVIN
1-159
159
4
A:1-124
B:201-324
C:401-524
D:601-724
124
124
124
124
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1f0va_ (A:)
1b: SCOP_d1f0vb_ (B:)
1c: SCOP_d1f0vc_ (C:)
1d: SCOP_d1f0vd_ (D:)
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Classes
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)
(
)
Folds
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
RNase A-like
(356)
Superfamily
:
RNase A-like
(356)
Family
:
Ribonuclease A-like
(347)
Protein domain
:
Ribonuclease A (also ribonuclease B, S)
(173)
Cow (Bos taurus) [TaxId: 9913]
(164)
1a
d1f0va_
A:
1b
d1f0vb_
B:
1c
d1f0vc_
C:
1d
d1f0vd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1f0vA00 (A:1-124)
1b: CATH_1f0vB00 (B:201-324)
1c: CATH_1f0vC00 (C:401-524)
1d: CATH_1f0vD00 (D:601-724)
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
P-30 Protein
(299)
Homologous Superfamily
:
P-30 Protein
(299)
[unclassified]
(21)
1a
1f0vA00
A:1-124
1b
1f0vB00
B:201-324
1c
1f0vC00
C:401-524
1d
1f0vD00
D:601-724
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Chain M
Chain N
Chain O
Chain P
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Asym.Unit (103 KB)
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Biol.Unit 2 (28 KB)
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Biol.Unit 3 (27 KB)
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