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1EYZ
Biol. Unit 1
Info
Asym.Unit (146 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
STRUCTURE OF ESCHERICHIA COLI PURT-ENCODED GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE COMPLEXED WITH MG AND AMPPNP
Authors
:
J. B. Thoden, S. Firestine, A. Nixon, S. J. Benkovic, H. M. Holden
Date
:
09 May 00 (Deposition) - 02 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transformylase, Purine Biosynthesis, Atp-Grasp, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, S. Firestine, A. Nixon, S. J. Benkovic, H. M. Holden
Molecular Structure Of Escherichia Coli Purt-Encoded Glycinamide Ribonucleotide Transformylase.
Biochemistry V. 39 8791 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: CHLORIDE ION (CLa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
4a: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOa)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
MPO
1
Ligand/Ion
3[N-MORPHOLINO]PROPANE SULFONIC ACID
5
NA
-1
Ligand/Ion
SODIUM ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:279 , ANP A:400 , HOH A:1119 , HOH A:1131
BINDING SITE FOR RESIDUE MG A 401
02
AC2
SOFTWARE
GLU A:267 , GLU A:279 , ANP A:400 , HOH A:1113
BINDING SITE FOR RESIDUE MG A 402
03
AC3
SOFTWARE
ASP A:286 , ANP A:400 , HOH A:1143 , HOH A:1258 , HOH A:1792 , HOH A:1794
BINDING SITE FOR RESIDUE MG A 403
04
AC4
SOFTWARE
GLU B:279 , ANP B:961 , HOH B:1615 , HOH B:1885
BINDING SITE FOR RESIDUE MG B 401
05
AC5
SOFTWARE
GLU B:267 , GLU B:279 , ANP B:961 , HOH B:1473
BINDING SITE FOR RESIDUE MG B 402
06
AC6
SOFTWARE
ALA A:53 , HOH A:1288 , HIS B:51 , ALA B:53 , HOH B:1563 , HOH B:2078
BINDING SITE FOR RESIDUE NA B 960
07
AC7
SOFTWARE
ASN A:100 , VAL A:101 , PRO A:103 , HOH A:1155 , HOH A:1162 , HOH A:1963
BINDING SITE FOR RESIDUE NA A 961
08
AC8
SOFTWARE
ARG A:43 , VAL A:58 , ARG A:119 , PHE A:134
BINDING SITE FOR RESIDUE CL A 970
09
AC9
SOFTWARE
ARG A:114 , ILE A:153 , LYS A:155 , SER A:160 , SER A:161 , GLY A:162 , GLN A:165 , GLU A:195 , GLY A:196 , VAL A:198 , PHE A:200 , GLU A:203 , GLU A:267 , PHE A:269 , GLU A:279 , MG A:401 , MG A:402 , MG A:403 , HOH A:1113 , HOH A:1119 , HOH A:1131 , HOH A:1138 , HOH A:1143 , HOH A:1158 , HOH A:1167 , HOH A:1175 , HOH A:1192 , HOH A:1252 , HOH A:1792
BINDING SITE FOR RESIDUE ANP A 400
10
BC1
SOFTWARE
ARG B:114 , SER B:130 , LYS B:155 , SER B:159 , SER B:160 , SER B:161 , GLY B:162 , GLU B:195 , GLY B:196 , VAL B:198 , PHE B:200 , GLU B:203 , GLN B:225 , GLU B:267 , PHE B:269 , GLU B:279 , MG B:401 , MG B:402 , HOH B:1461 , HOH B:1473 , HOH B:1579 , HOH B:1615 , HOH B:1626 , HOH B:1636 , HOH B:1677 , HOH B:2063 , HOH B:2064
BINDING SITE FOR RESIDUE ANP B 961
11
BC2
SOFTWARE
ASP A:46 , MET A:50 , HIS A:51 , ARG A:55 , SER A:56 , GLU A:143 , HOH A:1209 , HOH A:1293 , HOH A:1342 , HOH A:1952 , LEU B:8 , HIS B:54
BINDING SITE FOR RESIDUE MPO A 950
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1eyza1 (A:319-392)
1b: SCOP_d1eyzb1 (B:319-392)
2a: SCOP_d1eyza3 (A:113-318)
2b: SCOP_d1eyzb3 (B:113-318)
3a: SCOP_d1eyza2 (A:2-112)
3b: SCOP_d1eyzb2 (B:2-112)
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Classes
(
)
(
)
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(
)
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
BC C-terminal domain-like
(40)
Protein domain
:
Glycinamide ribonucleotide transformylase PurT, C-domain
(7)
Escherichia coli [TaxId: 562]
(7)
1a
d1eyza1
A:319-392
1b
d1eyzb1
B:319-392
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Glycinamide ribonucleotide transformylase PurT, domain 2
(7)
Escherichia coli [TaxId: 562]
(7)
2a
d1eyza3
A:113-318
2b
d1eyzb3
B:113-318
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Glycinamide ribonucleotide transformylase PurT, N-domain
(7)
Escherichia coli [TaxId: 562]
(7)
3a
d1eyza2
A:2-112
3b
d1eyzb2
B:2-112
[
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]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1eyzA03 (A:197-391)
1b: CATH_1eyzB03 (B:197-391)
2a: CATH_1eyzA02 (A:123-196)
2b: CATH_1eyzB02 (B:123-196)
3a: CATH_1eyzA01 (A:2-122)
3b: CATH_1eyzB01 (B:2-122)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Escherichia coli. Organism_taxid: 562.
(16)
1a
1eyzA03
A:197-391
1b
1eyzB03
B:197-391
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Escherichia coli. Organism_taxid: 562.
(21)
2a
1eyzA02
A:123-196
2b
1eyzB02
B:123-196
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Escherichia coli. Organism_taxid: 562.
(17)
3a
1eyzA01
A:2-122
3b
1eyzB01
B:2-122
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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