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1EY3
Asym. Unit
Info
Asym.Unit (262 KB)
Biol.Unit 1 (256 KB)
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(1)
Title
:
STRUCTURE OF ENOYL-COA HYDRATASE COMPLEXED WITH THE SUBSTRATE DAC-COA
Authors
:
B. J. Bahnson, V. E. Anderson, G. A. Petsko
Date
:
05 May 00 (Deposition) - 27 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Beta-Oxidation, Crotonase, Enoyl-Coa Hydratase, Fatty Acid Metabolism, Beta-Elimination, Syn-Addition, Concerted Reaction, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Bahnson, V. E. Anderson, G. A. Petsko
Structural Mechanism Of Enoyl-Coa Hydratase: Three Atoms From A Single Water Are Added In Either An E1Cb Stepwise Or Concerted Fashion.
Biochemistry V. 41 2621 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: 4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA (DAKa)
1b: 4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA (DAKb)
1c: 4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA (DAKc)
1d: 4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA (DAKd)
1e: 4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA (DAKe)
1f: 4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA (DAKf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DAK
6
Ligand/Ion
4-(N,N-DIMETHYLAMINO)CINNAMOYL-COA
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:56 , ALA A:57 , LEU A:58 , ALA A:60 , ALA A:96 , GLY A:97 , ALA A:98 , ASP A:99 , ILE A:100 , LEU A:117 , TRP A:120 , TYR A:137 , GLY A:141 , PRO A:163 , LEU A:167 , GLY A:172 , ARG A:197 , HOH A:501 , HOH A:542 , HOH A:545 , HOH A:565 , PHE B:263 , LYS B:282
BINDING SITE FOR RESIDUE DAK A 500
2
AC2
SOFTWARE
LYS B:56 , ALA B:57 , LEU B:58 , ALA B:96 , GLY B:97 , ALA B:98 , ASP B:99 , ILE B:100 , LYS B:101 , LEU B:117 , TRP B:120 , GLY B:141 , PRO B:163 , LEU B:167 , GLY B:172 , HOH B:518 , HOH B:554 , HOH B:563 , PHE C:263 , PHE C:279 , LYS C:282
BINDING SITE FOR RESIDUE DAK B 501
3
AC3
SOFTWARE
PHE A:263 , LYS C:56 , ALA C:57 , LEU C:58 , ALA C:60 , ALA C:96 , GLY C:97 , ALA C:98 , ASP C:99 , ILE C:100 , LEU C:117 , TRP C:120 , LEU C:139 , GLY C:141 , PRO C:163 , LEU C:167 , GLY C:172
BINDING SITE FOR RESIDUE DAK C 502
4
AC4
SOFTWARE
LYS D:56 , ALA D:57 , LEU D:58 , ALA D:60 , LYS D:92 , ALA D:96 , GLY D:97 , ALA D:98 , ASP D:99 , ILE D:100 , LYS D:101 , LEU D:117 , TRP D:120 , GLY D:141 , PRO D:163 , LEU D:167 , GLY D:172 , HOH D:524 , HOH D:571 , LYS E:260 , PHE E:263 , LYS E:282
BINDING SITE FOR RESIDUE DAK D 503
5
AC5
SOFTWARE
LYS E:56 , ALA E:57 , LEU E:58 , ALA E:60 , ALA E:96 , GLY E:97 , ALA E:98 , ASP E:99 , ILE E:100 , LYS E:101 , LEU E:117 , TRP E:120 , GLY E:141 , PRO E:163 , LEU E:167 , GLY E:172 , HOH E:525 , HOH E:541 , PHE F:263 , LYS F:282
BINDING SITE FOR RESIDUE DAK E 504
6
AC6
SOFTWARE
PHE D:263 , LYS F:56 , ALA F:57 , LEU F:58 , ALA F:60 , ALA F:96 , GLY F:97 , ALA F:98 , ASP F:99 , ILE F:100 , LEU F:117 , TRP F:120 , GLY F:141 , PRO F:163 , LEU F:167 , GLY F:172 , ARG F:197 , HOH F:528 , HOH F:553
BINDING SITE FOR RESIDUE DAK F 505
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:131-151,B:131-151,C:131-151,D:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECHM_RAT
131-151
6
A:131-151
B:131-151
C:131-151
D:131-151
E:131-151
F:131-151
[
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Exons
(7, 42)
Info
All Exons
Exon 1.2 (A:33-96 | B:33-96 | C:33-96 | D:33...)
Exon 1.3 (A:96-138 | B:96-138 | C:96-138 | D...)
Exon 1.4 (A:139-172 | B:139-172 | C:139-172 ...)
Exon 1.5 (A:172-207 | B:172-207 | C:172-207 ...)
Exon 1.6 (A:207-247 | B:207-247 | C:207-247 ...)
Exon 1.7 (A:247-269 | B:247-269 | C:247-269 ...)
Exon 1.8 (A:270-290 | B:270-290 | C:270-290 ...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000025446
1
ENSRNOE00000179019
chr1:
199910412-199910308
105
ECHM_RAT
1-30
30
0
-
-
1.2
ENSRNOT00000025446
2
ENSRNOE00000180786
chr1:
199908251-199908054
198
ECHM_RAT
30-96
67
6
A:33-96
B:33-96
C:33-96
D:33-96
E:33-96
F:33-96
64
64
64
64
64
64
1.3
ENSRNOT00000025446
3
ENSRNOE00000180948
chr1:
199907664-199907537
128
ECHM_RAT
96-138
43
6
A:96-138
B:96-138
C:96-138
D:96-138
E:96-138
F:96-138
43
43
43
43
43
43
1.4
ENSRNOT00000025446
4
ENSRNOE00000181097
chr1:
199906925-199906826
100
ECHM_RAT
139-172
34
6
A:139-172
B:139-172
C:139-172
D:139-172
E:139-172
F:139-172
34
34
34
34
34
34
1.5
ENSRNOT00000025446
5
ENSRNOE00000181259
chr1:
199905995-199905891
105
ECHM_RAT
172-207
36
6
A:172-207
B:172-207
C:172-207
D:172-207
E:172-207
F:172-207
36
36
36
36
36
36
1.6
ENSRNOT00000025446
6
ENSRNOE00000179510
chr1:
199905454-199905335
120
ECHM_RAT
207-247
41
6
A:207-247
B:207-247
C:207-247
D:207-247
E:207-247
F:207-247
41
41
41
41
41
41
1.7
ENSRNOT00000025446
7
ENSRNOE00000181392
chr1:
199903551-199903484
68
ECHM_RAT
247-269
23
6
A:247-269
B:247-269
C:247-269
D:247-269
E:247-269
F:247-269
23
23
23
23
23
23
1.8
ENSRNOT00000025446
8
ENSRNOE00000181536
chr1:
199902222-199901588
635
ECHM_RAT
270-290
21
6
A:270-290
B:270-290
C:270-290
D:270-290
E:270-290
F:270-290
21
21
21
21
21
21
[
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]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1ey3a_ (A:)
1b: SCOP_d1ey3e_ (E:)
1c: SCOP_d1ey3f_ (F:)
1d: SCOP_d1ey3b_ (B:)
1e: SCOP_d1ey3c_ (C:)
1f: SCOP_d1ey3d_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
Enoyl-CoA hydratase (crotonase)
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d1ey3a_
A:
1b
d1ey3e_
E:
1c
d1ey3f_
F:
1d
d1ey3b_
B:
1e
d1ey3c_
C:
1f
d1ey3d_
D:
[
close SCOP info
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1ey3A01 (A:33-232)
1b: CATH_1ey3B01 (B:33-232)
1c: CATH_1ey3C01 (C:33-232)
1d: CATH_1ey3D01 (D:33-232)
1e: CATH_1ey3E01 (E:33-232)
1f: CATH_1ey3F01 (F:33-232)
2a: CATH_1ey3A02 (A:233-290)
2b: CATH_1ey3E02 (E:233-290)
2c: CATH_1ey3F02 (F:233-290)
2d: CATH_1ey3B02 (B:233-290)
2e: CATH_1ey3C02 (C:233-290)
2f: CATH_1ey3D02 (D:233-290)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Norway rat (Rattus norvegicus)
(6)
1a
1ey3A01
A:33-232
1b
1ey3B01
B:33-232
1c
1ey3C01
C:33-232
1d
1ey3D01
D:33-232
1e
1ey3E01
E:33-232
1f
1ey3F01
F:33-232
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Norway rat (Rattus norvegicus)
(5)
2a
1ey3A02
A:233-290
2b
1ey3E02
E:233-290
2c
1ey3F02
F:233-290
2d
1ey3B02
B:233-290
2e
1ey3C02
C:233-290
2f
1ey3D02
D:233-290
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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