PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1EXU
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (59 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN MHC-RELATED FC RECEPTOR
Authors
:
A. P. West Jr. , P. J. Bjorkman
Date
:
04 May 00 (Deposition) - 10 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Immunoglobulin Binding Protein, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. West Jr. , P. J. Bjorkman
Crystal Structure And Immunoglobulin G Binding Properties Of The Human Major Histocompatibility Complex-Related Fc Receptor(, ).
Biochemistry V. 39 9698 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:48 , SER B:52 , ASP B:53
BINDING SITE FOR RESIDUE BME A 500
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076691 (D76N, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076691
D
96
N
B2MG_HUMAN
Disease (AMYL8)
398122820
B
D
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:250-256)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:78-84
FCGRN_HUMAN
273-279
1
A:250-256
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:4-86 (gaps))
Exon 1.4b (A:86-178)
Exon 1.6a (A:178-267)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2c/1.3
2: Boundary 1.3/1.4b
3: Boundary 1.4b/1.6a
4: Boundary 1.6a/1.7b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000221466
1
ENSE00001509905
chr19:
50015620-50016007
388
FCGRN_HUMAN
-
0
0
-
-
1.2c
ENST00000221466
2c
ENSE00001192687
chr19:
50016644-50016730
87
FCGRN_HUMAN
1-25
25
0
-
-
1.3
ENST00000221466
3
ENSE00001116461
chr19:
50017139-50017390
252
FCGRN_HUMAN
25-109
85
1
A:4-86 (gaps)
83
1.4b
ENST00000221466
4b
ENSE00001116460
chr19:
50017468-50017743
276
FCGRN_HUMAN
109-201
93
1
A:86-178
93
1.6a
ENST00000221466
6a
ENSE00000954708
chr19:
50027764-50028033
270
FCGRN_HUMAN
201-291
91
1
A:178-267
90
1.7b
ENST00000221466
7b
ENSE00000954709
chr19:
50028714-50028830
117
FCGRN_HUMAN
291-330
40
0
-
-
1.8
ENST00000221466
8
ENSE00001605505
chr19:
50029267-50029588
322
FCGRN_HUMAN
330-365
36
0
-
-
[
close EXON info
]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1exub_ (B:)
2a: SCOP_d1exua1 (A:177-267)
3a: SCOP_d1exua2 (A:4-176)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1exub_
B:
Protein domain
:
Fc (IgG) receptor, alpha-3 domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1exua1
A:177-267
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Fc (IgG) receptor, alpha-1 and alpha-2 domains
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d1exua2
A:4-176
[
close SCOP info
]
CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1exuA01 (A:4-175)
2a: CATH_1exuB00 (B:1-99)
2b: CATH_1exuA02 (A:176-266)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1exuA01
A:4-175
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1exuB00
B:1-99
2b
1exuA02
A:176-266
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (63 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1EXU
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help