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1EVL
Biol. Unit 1
Info
Asym.Unit (299 KB)
Biol.Unit 1 (151 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE WITH A THREONYL ADENYLATE ANALOG
Authors
:
R. Sankaranarayanan, A. C. Dock-Bregeon, B. Rees, D. Moras
Date
:
20 Apr 00 (Deposition) - 19 Jul 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Amino Acid Recognition, Zinc Ion, Trna-Synthetase, Adenylate Analog, Deletion Mutant, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sankaranarayanan, A. C. Dock-Bregeon, B. Rees, M. Bovee, J. Caillet, P. Romby, C. S. Francklyn, D. Moras
Zinc Ion Mediated Amino Acid Discrimination By Threonyl-Trna Synthetase.
Nat. Struct. Biol. V. 7 461 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADE... (TSBa)
1b: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADE... (TSBb)
1c: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADE... (TSBc)
1d: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADE... (TSBd)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
TSB
2
Ligand/Ion
5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:334 , HIS A:385 , HIS A:511 , TSB A:2002
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
CYS B:334 , HIS B:385 , HIS B:511 , TSB B:3002
BINDING SITE FOR RESIDUE ZN B 1
3
AC5
SOFTWARE
ZN A:1 , MET A:332 , CYS A:334 , ARG A:363 , GLU A:365 , MET A:374 , ARG A:375 , VAL A:376 , PHE A:379 , GLN A:381 , ASP A:383 , HIS A:385 , TYR A:462 , GLN A:479 , CYS A:480 , THR A:482 , GLN A:484 , HIS A:511 , GLY A:516 , SER A:517 , ARG A:520 , HOH A:2039 , HOH A:2192
BINDING SITE FOR RESIDUE TSB A 2002
4
AC6
SOFTWARE
ZN B:1 , MET B:332 , CYS B:334 , ARG B:363 , GLU B:365 , MET B:374 , ARG B:375 , VAL B:376 , PHE B:379 , GLN B:381 , ASP B:383 , HIS B:385 , TYR B:462 , GLN B:479 , CYS B:480 , GLN B:484 , HIS B:511 , GLY B:516 , SER B:517 , ARG B:520 , HOH B:3003 , HOH B:3055 , HOH B:3097
BINDING SITE FOR RESIDUE TSB B 3002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1evla2 (A:242-532)
1b: SCOP_d1evlb2 (B:242-532)
1c: SCOP_d1evlc2 (C:242-532)
1d: SCOP_d1evld2 (D:242-532)
2a: SCOP_d1evla1 (A:533-642)
2b: SCOP_d1evlb1 (B:533-642)
2c: SCOP_d1evlc1 (C:533-642)
2d: SCOP_d1evld1 (D:533-642)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Threonyl-tRNA synthetase (ThrRS)
(7)
Escherichia coli [TaxId: 562]
(5)
1a
d1evla2
A:242-532
1b
d1evlb2
B:242-532
1c
d1evlc2
C:242-532
1d
d1evld2
D:242-532
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Anticodon-binding domain-like
(97)
Superfamily
:
Class II aaRS ABD-related
(40)
Family
:
Anticodon-binding domain of Class II aaRS
(33)
Protein domain
:
Threonyl-tRNA synthetase (ThrRS), C-terminal domain
(7)
Escherichia coli [TaxId: 562]
(5)
2a
d1evla1
A:533-642
2b
d1evlb1
B:533-642
2c
d1evlc1
C:533-642
2d
d1evld1
D:533-642
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1evlA01 (A:242-530)
1b: CATH_1evlB01 (B:242-530)
1c: CATH_1evlC01 (C:242-530)
1d: CATH_1evlD01 (D:242-530)
2a: CATH_1evlA02 (A:531-642)
2b: CATH_1evlB02 (B:531-642)
2c: CATH_1evlC02 (C:531-642)
2d: CATH_1evlD02 (D:531-642)
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Escherichia coli. Organism_taxid: 562.
(7)
1a
1evlA01
A:242-530
1b
1evlB01
B:242-530
1c
1evlC01
C:242-530
1d
1evlD01
D:242-530
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.800, no name defined]
(40)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1evlA02
A:531-642
2b
1evlB02
B:531-642
2c
1evlC02
C:531-642
2d
1evlD02
D:531-642
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (299 KB)
Header - Asym.Unit
Biol.Unit 1 (151 KB)
Header - Biol.Unit 1
Biol.Unit 2 (149 KB)
Header - Biol.Unit 2
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