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1EV2
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (204 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FGF2 IN COMPLEX WITH THE EXTRACELLULAR LIGAND BINDING DOMAIN OF FGF RECEPTOR 2 (FGFR2)
Authors
:
A. N. Plotnikov, S. R. Hubbard, J. Schlessinger, M. Mohammadi
Date
:
19 Apr 00 (Deposition) - 31 May 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Immunoglobulin (Ig)Like Domains Belonging To The I-Set Subgroup Within Ig-Like Domains, B-Trefoil Fold, Growth Factor/Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. N. Plotnikov, S. R. Hubbard, J. Schlessinger, M. Mohammadi
Crystal Structures Of Two Fgf-Fgfr Complexes Reveal The Determinants Of Ligand-Receptor Specificity.
Cell(Cambridge, Mass. ) V. 101 413 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:27 , LYS B:119 , ARG B:120 , LYS B:125
BINDING SITE FOR RESIDUE SO4 B 9001
2
AC2
SOFTWARE
ASN C:27 , LYS C:119 , ARG C:120 , LYS C:125
BINDING SITE FOR RESIDUE SO4 C 9002
3
AC3
SOFTWARE
ASN D:27 , LYS D:119 , ARG D:120 , LYS D:125 , HOH D:8215
BINDING SITE FOR RESIDUE SO4 D 9003
4
AC4
SOFTWARE
ASN A:27 , LYS A:119 , ARG A:120 , LYS A:125
BINDING SITE FOR RESIDUE SO4 A 9004
[
close Site info
]
SAPs(SNPs)/Variants
(46, 180)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_017259 (A172F, chain E/F/G/H, )
02: VAR_017260 (M186T, chain E/F/G/H, )
03: VAR_036380 (R203C, chain E/F/G/H, )
04: VAR_004114 (S252F, chain E/F/G/H, )
05: VAR_004113 (S252L, chain E/F/G/H, )
06: VAR_004115 (S252W, chain E/F/G/H, )
07: VAR_004117 (P253R, chain E/F/G/H, )
08: VAR_017261 (P263L, chain E/F/G/H, )
09: VAR_004118 (S267P, chain E/F/G/H, )
10: VAR_042205 (G272V, chain G/H, )
11: VAR_004120 (F276V, chain E/F/G/H, )
12: VAR_004121 (C278F, chain E/F/G/H, )
13: VAR_017263 (C278Y, chain E/F/G/H, )
14: VAR_017264 (Y281C, chain E/F/G/H, )
15: VAR_042206 (D283N, chain E/F/G/H, )
16: VAR_017265 (I288S, chain E/F/G/H, )
17: VAR_004123 (Q289P, chain E/F/G/H, )
18: VAR_004124 (W290C, chain E/F/G/H, )
19: VAR_017266 (W290G, chain E/F/G/H, )
20: VAR_004125 (W290R, chain E/F/G/H, )
21: VAR_004126 (K292E, chain E/F/G/H, )
22: VAR_004128 (A314S, chain E/F/G/H, )
23: VAR_017267 (A315S, chain E/F/G/H, )
24: VAR_004129 (D321A, chain E/F/G/H, )
25: VAR_004130 (Y328C, chain E/F/G/H, )
26: VAR_004131 (N331I, chain E/F/G/H, )
27: VAR_017268 (A337P, chain E/F/G/H, )
28: VAR_004133 (G338E, chain E/F/G/H, )
29: VAR_015011 (G338R, chain E/F/G/H, )
30: VAR_017269 (Y340C, chain E/F/G/H, )
31: VAR_004134 (Y340H, chain E/F/G/H, )
32: VAR_004135 (T341P, chain E/F/G/H, )
33: VAR_004136 (C342F, chain E/F/G/H, )
34: VAR_017270 (C342G, chain E/F/G/H, )
35: VAR_004137 (C342R, chain E/F/G/H, )
36: VAR_004138 (C342S, chain E/F/G/H, )
37: VAR_017271 (C342W, chain E/F/G/H, )
38: VAR_004139 (C342Y, chain E/F/G/H, )
39: VAR_004140 (A344G, chain E/F/G/H, )
40: VAR_004141 (A344P, chain E/F/G/H, )
41: VAR_004142 (S347C, chain E/F/G/H, )
42: VAR_004143 (S351C, chain E/F/G/H, )
43: VAR_004144 (S354C, chain E/F/G/H, )
44: VAR_017272 (S354Y, chain E/F/G/H, )
45: VAR_004146 (V359F, chain E/F/G/H, )
46: VAR_017273 (A362S, chain G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_017259
A
172
F
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
A
172
F
02
UniProt
VAR_017260
M
186
T
FGFR2_HUMAN
Polymorphism
755793
E/F/G/H
M
186
T
03
UniProt
VAR_036380
R
203
C
FGFR2_HUMAN
Unclassified
---
E/F/G/H
R
203
C
04
UniProt
VAR_004114
S
252
F
FGFR2_HUMAN
Disease (APRS)
---
E/F/G/H
S
252
F
05
UniProt
VAR_004113
S
252
L
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
S
252
L
06
UniProt
VAR_004115
S
252
W
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
S
252
W
07
UniProt
VAR_004117
P
253
R
FGFR2_HUMAN
Disease (APRS)
---
E/F/G/H
P
253
R
08
UniProt
VAR_017261
P
263
L
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
P
263
L
09
UniProt
VAR_004118
S
267
P
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
S
267
P
10
UniProt
VAR_042205
G
272
V
FGFR2_HUMAN
Unclassified
---
G/H
G
272
V
11
UniProt
VAR_004120
F
276
V
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
F
276
V
12
UniProt
VAR_004121
C
278
F
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
C
278
F
13
UniProt
VAR_017263
C
278
Y
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
C
278
Y
14
UniProt
VAR_017264
Y
281
C
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
Y
281
C
15
UniProt
VAR_042206
D
283
N
FGFR2_HUMAN
Unclassified
---
E/F/G/H
D
283
N
16
UniProt
VAR_017265
I
288
S
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
I
288
S
17
UniProt
VAR_004123
Q
289
P
FGFR2_HUMAN
Disease (JWS)
---
E/F/G/H
Q
289
P
18
UniProt
VAR_004124
W
290
C
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
W
290
C
19
UniProt
VAR_017266
W
290
G
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
W
290
G
20
UniProt
VAR_004125
W
290
R
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
W
290
R
21
UniProt
VAR_004126
K
292
E
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
K
292
E
22
UniProt
VAR_004128
A
314
S
FGFR2_HUMAN
Unclassified
---
E/F/G/H
A
314
S
23
UniProt
VAR_017267
A
315
S
FGFR2_HUMAN
Unclassified
---
E/F/G/H
A
315
S
24
UniProt
VAR_004129
D
321
A
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
D
321
A
25
UniProt
VAR_004130
Y
328
C
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
Y
328
C
26
UniProt
VAR_004131
N
331
I
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
N
331
I
27
UniProt
VAR_017268
A
337
P
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
A
337
P
28
UniProt
VAR_004133
G
338
E
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
G
338
E
29
UniProt
VAR_015011
G
338
R
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
G
338
R
30
UniProt
VAR_017269
Y
340
C
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
Y
340
C
31
UniProt
VAR_004134
Y
340
H
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
Y
340
H
32
UniProt
VAR_004135
T
341
P
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
T
341
P
33
UniProt
VAR_004136
C
342
F
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
C
342
F
34
UniProt
VAR_017270
C
342
G
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
C
342
G
35
UniProt
VAR_004137
C
342
R
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
C
342
R
36
UniProt
VAR_004138
C
342
S
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
C
342
S
37
UniProt
VAR_017271
C
342
W
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
C
342
W
38
UniProt
VAR_004139
C
342
Y
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
C
342
Y
39
UniProt
VAR_004140
A
344
G
FGFR2_HUMAN
Disease (JWS)
---
E/F/G/H
A
344
G
40
UniProt
VAR_004141
A
344
P
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
A
344
P
41
UniProt
VAR_004142
S
347
C
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
S
347
C
42
UniProt
VAR_004143
S
351
C
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
S
351
C
43
UniProt
VAR_004144
S
354
C
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
S
354
C
44
UniProt
VAR_017272
S
354
Y
FGFR2_HUMAN
Disease (CS)
---
E/F/G/H
S
354
Y
45
UniProt
VAR_004146
V
359
F
FGFR2_HUMAN
Disease (PS)
---
E/F/G/H
V
359
F
46
UniProt
VAR_017273
A
362
S
FGFR2_HUMAN
Disease (CS)
---
G/H
A
362
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:80-103,B:80-103,C:80-103,D:80-10...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF2_HUMAN
222-245
4
A:80-103
B:80-103
C:80-103
D:80-103
[
close PROSITE info
]
Exons
(9, 34)
Info
All Exons
Exon 1.1 (A:16-51 | B:16-51 | C:16-51 | D:16...)
Exon 1.2 (A:51-85 | B:51-85 | C:51-85 | D:51...)
Exon 1.3b (A:86-145 | B:86-145 | C:86-145 | D...)
Exon 2.6a (E:150-152 | F:150-152 | G:151-152 ...)
Exon 2.7 (E:152-208 | F:152-208 | G:152-208 ...)
Exon 2.8 (E:209-250 | F:209-250 | G:209-250 ...)
Exon 2.15 (E:250-313 (gaps) | F:250-313 (gaps...)
Exon 2.18b (E:314-360 | F:314-359 | G:314-362 ...)
Exon 2.19c (- | - | G:362-363 | H:362-363)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3b
04: Boundary 1.3b/-
05: Boundary 2.5b/2.6a
06: Boundary 2.6a/2.7
07: Boundary 2.7/2.8
08: Boundary 2.8/2.15
09: Boundary 2.15/2.18b
10: Boundary 2.18b/2.19c
11: Boundary 2.19c/2.21
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264498
1
ENSE00001081612
chr4:
123747863-123748507
645
FGF2_HUMAN
1-193
193
4
A:16-51
B:16-51
C:16-51
D:16-51
36
36
36
36
1.2
ENST00000264498
2
ENSE00000970285
chr4:
123797476-123797579
104
FGF2_HUMAN
193-227
35
4
A:51-85
B:51-85
C:51-85
D:51-85
35
35
35
35
1.3b
ENST00000264498
3b
ENSE00001081614
chr4:
123813366-123819391
6026
FGF2_HUMAN
228-288
61
4
A:86-145
B:86-145
C:86-145
D:86-145
60
60
60
60
2.1h
ENST00000358487
1h
ENSE00001816393
chr10:
123357598-123357476
123
FGFR2_HUMAN
-
0
0
-
-
2.3a
ENST00000358487
3a
ENSE00002141262
chr10:
123353481-123353223
259
FGFR2_HUMAN
1-37
37
0
-
-
2.5b
ENST00000358487
5b
ENSE00001099029
chr10:
123325218-123324952
267
FGFR2_HUMAN
37-126
90
0
-
-
2.6a
ENST00000358487
6a
ENSE00001099020
chr10:
123324093-123324016
78
FGFR2_HUMAN
126-152
27
4
E:150-152
F:150-152
G:151-152
H:151-152
3
3
2
2
2.7
ENST00000358487
7
ENSE00001295614
chr10:
123310973-123310804
170
FGFR2_HUMAN
152-208
57
4
E:152-208
F:152-208
G:152-208
H:152-208
57
57
57
57
2.8
ENST00000358487
8
ENSE00000812216
chr10:
123298229-123298106
124
FGFR2_HUMAN
209-250
42
4
E:209-250
F:209-250
G:209-250
H:209-250
42
42
42
42
2.15
ENST00000358487
15
ENSE00001099035
chr10:
123279683-123279493
191
FGFR2_HUMAN
250-313
64
4
E:250-313 (gaps)
F:250-313 (gaps)
G:250-313 (gaps)
H:250-313 (gaps)
64
64
64
64
2.18b
ENST00000358487
18b
ENSE00001146218
chr10:
123276977-123276833
145
FGFR2_HUMAN
314-362
49
4
E:314-360
F:314-359
G:314-362
H:314-362
47
46
49
49
2.19c
ENST00000358487
19c
ENSE00001448727
chr10:
123274833-123274631
203
FGFR2_HUMAN
362-429
68
2
-
-
G:362-363
H:362-363
-
-
2
2
2.21
ENST00000358487
21
ENSE00001015834
chr10:
123263455-123263304
152
FGFR2_HUMAN
430-480
51
0
-
-
2.22
ENST00000358487
22
ENSE00001627890
chr10:
123260461-123260340
122
FGFR2_HUMAN
480-521
42
0
-
-
2.23
ENST00000358487
23
ENSE00001146272
chr10:
123258119-123258009
111
FGFR2_HUMAN
521-558
38
0
-
-
2.24
ENST00000358487
24
ENSE00001146264
chr10:
123256236-123256046
191
FGFR2_HUMAN
558-621
64
0
-
-
2.25
ENST00000358487
25
ENSE00001099037
chr10:
123247627-123247505
123
FGFR2_HUMAN
622-662
41
0
-
-
2.26
ENST00000358487
26
ENSE00001099030
chr10:
123246938-123246868
71
FGFR2_HUMAN
663-686
24
0
-
-
2.27
ENST00000358487
27
ENSE00001146235
chr10:
123245046-123244909
138
FGFR2_HUMAN
686-732
47
0
-
-
2.28b
ENST00000358487
28b
ENSE00002167762
chr10:
123243317-123243212
106
FGFR2_HUMAN
732-767
36
0
-
-
2.31h
ENST00000358487
31h
ENSE00001847306
chr10:
123239535-123237855
1681
FGFR2_HUMAN
768-821
54
0
-
-
[
close EXON info
]
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1ev2a_ (A:)
1b: SCOP_d1ev2c_ (C:)
1c: SCOP_d1ev2d_ (D:)
1d: SCOP_d1ev2b_ (B:)
2a: SCOP_d1ev2e1 (E:150-250)
2b: SCOP_d1ev2g2 (G:251-363)
2c: SCOP_d1ev2h1 (H:151-250)
2d: SCOP_d1ev2h2 (H:251-363)
2e: SCOP_d1ev2e2 (E:251-360)
2f: SCOP_d1ev2f1 (F:150-250)
2g: SCOP_d1ev2f2 (F:251-359)
2h: SCOP_d1ev2g1 (G:151-250)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Basic FGF (FGF2)
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1ev2a_
A:
1b
d1ev2c_
C:
1c
d1ev2d_
D:
1d
d1ev2b_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Fibroblast growth factor receptor, FGFR
(15)
Human (Homo sapiens), FGFR2a [TaxId: 9606]
(10)
2a
d1ev2e1
E:150-250
2b
d1ev2g2
G:251-363
2c
d1ev2h1
H:151-250
2d
d1ev2h2
H:251-363
2e
d1ev2e2
E:251-360
2f
d1ev2f1
F:150-250
2g
d1ev2f2
F:251-359
2h
d1ev2g1
G:151-250
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1ev2E01 (E:150-250)
1b: CATH_1ev2F01 (F:150-250)
1c: CATH_1ev2G01 (G:151-250)
1d: CATH_1ev2H01 (H:151-250)
1e: CATH_1ev2H02 (H:251-357)
1f: CATH_1ev2G02 (G:251-357)
1g: CATH_1ev2F02 (F:251-357)
1h: CATH_1ev2E02 (E:251-357)
2a: CATH_1ev2A00 (A:16-145)
2b: CATH_1ev2B00 (B:16-145)
2c: CATH_1ev2C00 (C:16-145)
2d: CATH_1ev2D00 (D:16-145)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1ev2E01
E:150-250
1b
1ev2F01
F:150-250
1c
1ev2G01
G:151-250
1d
1ev2H01
H:151-250
1e
1ev2H02
H:251-357
1f
1ev2G02
G:251-357
1g
1ev2F02
F:251-357
1h
1ev2E02
E:251-357
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
2a
1ev2A00
A:16-145
2b
1ev2B00
B:16-145
2c
1ev2C00
C:16-145
2d
1ev2D00
D:16-145
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Pfam Domains
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Asymmetric Unit 1
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