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1EUZ
Asym. Unit
Info
Asym.Unit (397 KB)
Biol.Unit 1 (391 KB)
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(1)
Title
:
GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGATED STATE
Authors
:
M. Nakasako
Date
:
19 Apr 00 (Deposition) - 25 Apr 01 (Release) - 22 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Glutamate, Hyperthermostability, Domain Closure Movement, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nakasako, T. Fujisawa, S. Adachi, T. Kudo, S. Higuchi
Large-Scale Domain Movements And Hydration Structure Change In The Active-Site Cleft Of Unligated Glutamate Dehydrogenase From Thermococcus Profundus Studied By Cryogenic X-Ray Crystal Structure Analysis And Small-Angle X-Ray Scattering.
Biochemistry V. 40 3069 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 17)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
17
Ligand/Ion
SULFATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:24 , GLU A:25 , LYS A:419
BINDING SITE FOR RESIDUE SO4 A 600
02
AC2
SOFTWARE
LYS A:69 , GLY A:70 , MET A:90 , ALA A:143 , VAL A:348 , SER A:351
BINDING SITE FOR RESIDUE SO4 A 601
03
AC3
SOFTWARE
THR A:191 , ASN A:222 , ALA A:223
BINDING SITE FOR RESIDUE SO4 A 602
04
AC4
SOFTWARE
ARG A:331 , HIS A:388
BINDING SITE FOR RESIDUE SO4 A 603
05
AC5
SOFTWARE
ASP A:413 , PRO C:178 , LEU C:179
BINDING SITE FOR RESIDUE SO4 C 604
06
AC6
SOFTWARE
ASP A:244 , SER A:245 , LYS A:264
BINDING SITE FOR RESIDUE SO4 A 605
07
AC7
SOFTWARE
PRO B:178 , LEU B:179 , ARG B:187
BINDING SITE FOR RESIDUE SO4 B 606
08
AC8
SOFTWARE
THR B:191 , ASN B:222 , ALA B:223
BINDING SITE FOR RESIDUE SO4 B 607
09
AC9
SOFTWARE
ASP B:244 , SER B:245 , LYS B:264
BINDING SITE FOR RESIDUE SO4 B 608
10
BC1
SOFTWARE
SER C:245 , LYS C:264
BINDING SITE FOR RESIDUE SO4 C 609
11
BC2
SOFTWARE
PRO D:178 , LEU D:179 , ASP E:413
BINDING SITE FOR RESIDUE SO4 D 610
12
BC3
SOFTWARE
SER E:24 , GLU E:25 , LYS E:419
BINDING SITE FOR RESIDUE SO4 E 611
13
BC4
SOFTWARE
PRO E:178 , LEU E:179
BINDING SITE FOR RESIDUE SO4 E 612
14
BC5
SOFTWARE
SER E:245 , ARG E:246 , GLY E:247 , THR E:280 , ASN E:281
BINDING SITE FOR RESIDUE SO4 E 613
15
BC6
SOFTWARE
ASP E:244 , SER E:245 , LYS E:264
BINDING SITE FOR RESIDUE SO4 E 614
16
BC7
SOFTWARE
PRO F:178 , LEU F:179
BINDING SITE FOR RESIDUE SO4 F 615
17
BC8
SOFTWARE
ASP F:244 , SER F:245 , LYS F:264
BINDING SITE FOR RESIDUE SO4 F 616
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: GLFV_DEHYDROGENASE (A:99-112,B:99-112,C:99-112,D:99-11...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
DHE3_THEPR
99-112
6
A:99-112
B:99-112
C:99-112
D:99-112
E:99-112
F:99-112
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1euza2 (A:4-180)
1b: SCOP_d1euzb2 (B:4-180)
1c: SCOP_d1euzc2 (C:4-180)
1d: SCOP_d1euzd2 (D:4-180)
1e: SCOP_d1euze2 (E:4-180)
1f: SCOP_d1euzf2 (F:3-180)
2a: SCOP_d1euza1 (A:181-419)
2b: SCOP_d1euzb1 (B:181-419)
2c: SCOP_d1euzc1 (C:181-419)
2d: SCOP_d1euzd1 (D:181-419)
2e: SCOP_d1euze1 (E:181-419)
2f: SCOP_d1euzf1 (F:181-419)
View:
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Classes
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)
(
)
Folds
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Aminoacid dehydrogenases
(28)
Protein domain
:
Glutamate dehydrogenase
(19)
Thermococcus profundus [TaxId: 49899]
(1)
1a
d1euza2
A:4-180
1b
d1euzb2
B:4-180
1c
d1euzc2
C:4-180
1d
d1euzd2
D:4-180
1e
d1euze2
E:4-180
1f
d1euzf2
F:3-180
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Glutamate dehydrogenase
(19)
Thermococcus profundus [TaxId: 49899]
(1)
2a
d1euza1
A:181-419
2b
d1euzb1
B:181-419
2c
d1euzc1
C:181-419
2d
d1euzd1
D:181-419
2e
d1euze1
E:181-419
2f
d1euzf1
F:181-419
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1euzA01 (A:36-181)
1b: CATH_1euzB01 (B:36-181)
1c: CATH_1euzC01 (C:36-181)
1d: CATH_1euzD01 (D:36-181)
1e: CATH_1euzE01 (E:36-181)
1f: CATH_1euzF01 (F:36-181)
2a: CATH_1euzA02 (A:182-418)
2b: CATH_1euzB02 (B:182-418)
2c: CATH_1euzC02 (C:182-418)
2d: CATH_1euzD02 (D:182-418)
2e: CATH_1euzE02 (E:182-418)
2f: CATH_1euzF02 (F:182-418)
View:
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Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Leucine Dehydrogenase; Chain A, domain 1
(52)
Homologous Superfamily
:
Leucine Dehydrogenase, chain A, domain 1
(52)
Thermococcus profundus. Organism_taxid: 49899.
(1)
1a
1euzA01
A:36-181
1b
1euzB01
B:36-181
1c
1euzC01
C:36-181
1d
1euzD01
D:36-181
1e
1euzE01
E:36-181
1f
1euzF01
F:36-181
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermococcus profundus. Organism_taxid: 49899.
(1)
2a
1euzA02
A:182-418
2b
1euzB02
B:182-418
2c
1euzC02
C:182-418
2d
1euzD02
D:182-418
2e
1euzE02
E:182-418
2f
1euzF02
F:182-418
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Chain F
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