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1EUJ
Asym. Unit
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Asym.Unit (58 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
A NOVEL ANTI-TUMOR CYTOKINE CONTAINS A RNA-BINDING MOTIF PRESENT IN AMINOACYL-TRNA SYNTHETASES
Authors
:
Y. Kim, J. Shin, R. Li, C. Cheong, S. Kim
Date
:
17 Apr 00 (Deposition) - 06 Sep 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Emap 2, Emap Ii, Cytokine, Trna Synthetase, Apoptosis, Rna Binding Motif
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, J. Shin, R. Li, C. Cheong, K. Kim, S. Kim
A Novel Anti-Tumor Cytokine Contains An Rna Binding Motif Present In Aminoacyl-Trna Synthetases.
J. Biol. Chem. V. 275 27062 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TRBD (A:5-106,B:5-106)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRBD
PS50886
tRNA-binding domain profile.
AIMP1_HUMAN
151-252
2
A:5-106
B:5-106
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Exons
(3, 6)
Info
All Exons
Exon 1.7c (A:3-55 | B:3-55)
Exon 1.8 (A:56-112 | B:56-112)
Exon 1.9a (A:112-166 | B:112-166)
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1: Boundary 1.6/1.7c
2: Boundary 1.7c/1.8
3: Boundary 1.8/1.9a
4: Boundary 1.9a/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000358008
2
ENSE00001406774
chr4:
107236853-107237501
649
AIMP1_HUMAN
-
0
0
-
-
1.4
ENST00000358008
4
ENSE00001620810
chr4:
107246142-107246275
134
AIMP1_HUMAN
1-37
37
0
-
-
1.5
ENST00000358008
5
ENSE00001080605
chr4:
107248608-107248721
114
AIMP1_HUMAN
37-75
39
0
-
-
1.6
ENST00000358008
6
ENSE00001196296
chr4:
107249233-107249400
168
AIMP1_HUMAN
75-131
57
0
-
-
1.7c
ENST00000358008
7c
ENSE00001080606
chr4:
107252829-107253040
212
AIMP1_HUMAN
131-201
71
2
A:3-55
B:3-55
53
53
1.8
ENST00000358008
8
ENSE00001080603
chr4:
107258026-107258194
169
AIMP1_HUMAN
202-258
57
2
A:56-112
B:56-112
57
57
1.9a
ENST00000358008
9a
ENSE00001926722
chr4:
107268683-107269648
966
AIMP1_HUMAN
258-312
55
2
A:112-166
B:112-166
55
55
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1euja_ (A:)
1b: SCOP_d1eujb_ (B:)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Myf domain
(20)
Protein domain
:
EMAP II
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1euja_
A:
1b
d1eujb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1eujA00 (A:3-166)
1b: CATH_1eujB00 (B:3-166)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
1eujA00
A:3-166
1b
1eujB00
B:3-166
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Pfam Domains
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Asym.Unit (58 KB)
Header - Asym.Unit
Biol.Unit 1 (29 KB)
Header - Biol.Unit 1
Biol.Unit 2 (28 KB)
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