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1ETH
Biol. Unit 1
Info
Asym.Unit (240 KB)
Biol.Unit 1 (214 KB)
Biol.Unit 2 (214 KB)
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(1)
Title
:
TRIACYLGLYCEROL LIPASE/COLIPASE COMPLEX
Authors
:
J. Hermoso, D. Pignol, B. Kerfelec, I. Crenon, C. Chapus, J. C. Fontecil
Date
:
13 Sep 95 (Deposition) - 07 Dec 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,C,D (1x)
Keywords
:
Complex (Hydrolase-Cofactor), Lipid Degradation, Complex (Hydrolase- Cofactor) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Hermoso, D. Pignol, B. Kerfelec, I. Crenon, C. Chapus, J. C. Fontecilla-Camps
Lipase Activation By Nonionic Detergents. The Crystal Structure Of The Porcine Lipase-Colipase-Tetraethylene Glycol Monooctyl Ether Complex.
J. Biol. Chem. V. 271 18007 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: BETA-MERCAPTOETHANOL (BMEa)
2b: BETA-MERCAPTOETHANOL (BMEb)
3a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
3b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
3c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
3d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
4a: CALCIUM ION (CAa)
4b: CALCIUM ION (CAb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
3
C8E
4
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
4
CA
-1
Ligand/Ion
CALCIUM ION
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:581 , GLU C:134 , ARG C:165 , THR C:166 , ASN C:167 , NAG C:451
BINDING SITE FOR RESIDUE NAG C 450
02
AC2
SOFTWARE
NAG C:450 , BMA C:452
BINDING SITE FOR RESIDUE NAG C 451
03
AC3
SOFTWARE
ARG C:164 , NAG C:451 , BMA C:453 , BMA C:454
BINDING SITE FOR RESIDUE BMA C 452
04
AC4
SOFTWARE
BMA C:452
BINDING SITE FOR RESIDUE BMA C 453
05
AC5
SOFTWARE
HOH A:499 , CYS C:10 , ARG C:164 , ARG C:165 , BMA C:452
BINDING SITE FOR RESIDUE BMA C 454
06
AC6
SOFTWARE
ASN A:167 , NAG A:451 , ASP C:287
BINDING SITE FOR RESIDUE NAG A 450
07
AC7
SOFTWARE
NAG A:450 , BMA A:452 , ASP C:287
BINDING SITE FOR RESIDUE NAG A 451
08
AC8
SOFTWARE
NAG A:451 , BMA A:453 , BMA A:454
BINDING SITE FOR RESIDUE BMA A 452
09
AC9
SOFTWARE
BMA A:452 , THR C:221 , VAL C:325
BINDING SITE FOR RESIDUE BMA A 453
10
BC1
SOFTWARE
ARG A:164 , ARG A:165 , BMA A:452
BINDING SITE FOR RESIDUE BMA A 454
11
BC2
SOFTWARE
GLU A:188 , ARG A:191 , ASP A:193 , ASP A:196
BINDING SITE FOR RESIDUE CA A 449
12
BC3
SOFTWARE
GLU C:188 , ARG C:191 , ASP C:193 , ASP C:196
BINDING SITE FOR RESIDUE CA C 449
13
BC4
SOFTWARE
ILE A:79 , SER A:153 , PHE A:216 , TRP A:253 , ARG A:257 , HIS A:264 , C8E A:456 , HOH A:537 , TYR B:55 , TYR B:59 , ILE B:79 , THR B:80 , ASN B:81
BINDING SITE FOR RESIDUE C8E A 455
14
BC5
SOFTWARE
HIS A:76 , GLY A:77 , PHE A:78 , ILE A:79 , ASP A:80 , HIS A:152 , ARG A:257 , C8E A:455 , ILE B:33 , TYR B:59
BINDING SITE FOR RESIDUE C8E A 456
15
BC6
SOFTWARE
CYS A:182 , HOH A:495 , HOH A:544 , SER B:74 , LEU B:75
BINDING SITE FOR RESIDUE BME A 457
16
BC7
SOFTWARE
ILE C:79 , SER C:153 , PHE C:216 , TRP C:253 , ARG C:257 , ALA C:261 , HIS C:264 , C8E C:456 , ILE D:33 , TYR D:55 , TYR D:59 , VAL D:76 , ILE D:79 , THR D:80
BINDING SITE FOR RESIDUE C8E C 455
17
BC8
SOFTWARE
HIS C:76 , GLY C:77 , PHE C:78 , ILE C:79 , ASP C:80 , TRP C:86 , HIS C:152 , SER C:153 , ARG C:257 , C8E C:455 , TYR D:59 , PHE D:84
BINDING SITE FOR RESIDUE C8E C 456
18
BC9
SOFTWARE
CYS C:182 , HOH C:581 , SER D:74 , LEU D:75
BINDING SITE FOR RESIDUE BME C 457
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(4, 6)
Info
All PROSITE Patterns/Profiles
1: COLIPASE_2 (B:6-90)
2: COLIPASE_1 (B:55-63)
3: LIPASE_SER (A:147-156,C:147-156)
4: PLAT (A:339-448,C:339-448)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COLIPASE_2
PS51342
Colipase family profile.
COL_PIG
23-107
1
B:6-90
-
2
COLIPASE_1
PS00121
Colipase signature.
COL_PIG
72-80
1
B:55-63
-
3
LIPASE_SER
PS00120
Lipases, serine active site.
LIPP_PIG
147-156
2
A:147-156
C:147-156
4
PLAT
PS50095
PLAT domain profile.
LIPP_PIG
339-450
2
A:339-448
C:339-448
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d1etha1 (A:337-448)
1b: SCOP_d1ethc1 (C:337-448)
2a: SCOP_d1etha2 (A:1-336)
2b: SCOP_d1ethc2 (C:1-336)
3a: SCOP_d1ethb1 (B:4-44)
3b: SCOP_d1ethb2 (B:45-90)
3c: SCOP_d1ethd1 (D:4-44)
3d: SCOP_d1ethd2 (D:45-90)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
Colipase-binding domain
(8)
Protein domain
:
Pancreatic lipase, C-terminal domain
(8)
Pig (Sus scrofa) [TaxId: 9823]
(1)
1a
d1etha1
A:337-448
1b
d1ethc1
C:337-448
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Pancreatic lipase, N-terminal domain
(12)
Protein domain
:
Pancreatic lipase, N-terminal domain
(8)
Pig (Sus scrofa) [TaxId: 9823]
(1)
2a
d1etha2
A:1-336
2b
d1ethc2
C:1-336
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Colipase-like
(7)
Family
:
Colipase-like
(7)
Protein domain
:
(Pro)colipase
(6)
Pig (Sus scrofa) [TaxId: 9823]
(6)
3a
d1ethb1
B:4-44
3b
d1ethb2
B:45-90
3c
d1ethd1
D:4-44
3d
d1ethd2
D:45-90
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1ethA01 (A:1-338)
1b: CATH_1ethC01 (C:1-338)
2a: CATH_1ethB00 (B:4-90)
2b: CATH_1ethD00 (D:4-90)
3a: CATH_1ethA02 (A:339-447)
3b: CATH_1ethC02 (C:339-447)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pig (Sus scrofa)
(22)
1a
1ethA01
A:1-338
1b
1ethC01
C:1-338
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Lipase, subunit A
(8)
Homologous Superfamily
:
Lipase, subunit A
(8)
Pig (Sus scrofa)
(5)
2a
1ethB00
B:4-90
2b
1ethD00
D:4-90
Architecture
:
Sandwich
(5577)
Topology
:
Lipoxygenase-1
(46)
Homologous Superfamily
:
Lipoxygenase-1
(44)
Pig (Sus scrofa)
(3)
3a
1ethA02
A:339-447
3b
1ethC02
C:339-447
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
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