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1ETB
Biol. Unit 1
Info
Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (84 KB)
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(1)
Title
:
THE X-RAY CRYSTAL STRUCTURE REFINEMENTS OF NORMAL HUMAN TRANSTHYRETIN AND THE AMYLOIDOGENIC VAL 30-->MET VARIANT TO 1.7 ANGSTROMS RESOLUTION
Authors
:
B. C. Braden, L. K. Steinrauf, J. A. Hamilton
Date
:
12 May 93 (Deposition) - 26 Jan 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : 1,2
Biol. Unit 1: 1,2 (1x)
Biol. Unit 2: 1,2 (2x)
Keywords
:
Transport(Thyroxine)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Hamilton, L. K. Steinrauf, B. C. Braden, J. Liepnieks, M. D. Benson, G. Holmgren, O. Sandgren, L. Steen
The X-Ray Crystal Structure Refinements Of Normal Human Transthyretin And The Amyloidogenic Val-30-->Met Variant To 1. 7-A Resolution.
J. Biol. Chem. V. 268 2416 1993
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 3,5,3',5'-TETRAIODO-L-THYRONINE (T44a)
1b: 3,5,3',5'-TETRAIODO-L-THYRONINE (T44b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
T44
2
Ligand/Ion
3,5,3',5'-TETRAIODO-L-THYRONINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AA (AUTHOR)
2: AC1 (SOFTWARE)
3: AC2 (SOFTWARE)
4: BB (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AA
AUTHOR
LYS 1:15 , GLU 1:54 , LEU 1:17 , ALA 1:108 , THR 1:109 , LEU 1:110 , SER 1:117
T4 BINDING SITE COMPOSED OF RESIDUES FROM CHAIN 1 AND ITS 2-FOLD SYMMETRIC CHAIN. ONLY THE RESIDUES FROM CHAIN 1 ARE LISTED HERE
2
AC1
SOFTWARE
MET 1:13 , LYS 1:15 , LEU 1:17 , GLU 1:54 , ALA 1:108 , THR 1:109 , LEU 1:110 , HOH 1:215
BINDING SITE FOR RESIDUE T44 1 128
3
AC2
SOFTWARE
LYS 2:15 , LEU 2:17 , GLU 2:54 , ALA 2:108 , THR 2:109 , LEU 2:110 , HOH 2:211
BINDING SITE FOR RESIDUE T44 2 129
4
BB
AUTHOR
LYS 2:15 , GLU 2:54 , LEU 2:17 , ALA 2:108 , THR 2:109 , LEU 2:110 , SER 2:117
T4 BINDING SITE COMPOSED OF RESIDUES FROM CHAIN 2 AND ITS 2-FOLD SYMMETRIC CHAIN. ONLY THE RESIDUES FROM CHAIN 1 ARE LISTED HERE
[
close Site info
]
SAPs(SNPs)/Variants
(86, 172)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_007547 (C10R, chain 1/2, )
02: VAR_038959 (L12P, chain 1/2, )
03: VAR_038960 (M13I, chain 1/2, )
04: VAR_007548 (D18E, chain 1/2, )
05: VAR_007549 (D18G, chain 1/2, )
06: VAR_007550 (V20I, chain 1/2, )
07: VAR_038961 (S23N, chain 1/2, )
08: VAR_007551 (P24S, chain 1/2, )
09: VAR_010658 (V28M, chain 1/2, )
10: VAR_007552 (V30A, chain 1/2, )
11: VAR_038962 (V30G, chain 1/2, )
12: VAR_007553 (V30L, chain 1/2, )
13: VAR_007554 (V30M, chain 1/2, )
14: VAR_038963 (F33C, chain 1/2, )
15: VAR_007555 (F33I, chain 1/2, )
16: VAR_007556 (F33L, chain 1/2, )
17: VAR_038964 (F33V, chain 1/2, )
18: VAR_038965 (R34T, chain 1/2, )
19: VAR_038966 (K35N, chain 1/2, )
20: VAR_007557 (A36P, chain 1/2, )
21: VAR_038967 (D38A, chain 1/2, )
22: VAR_038968 (D38V, chain 1/2, )
23: VAR_038969 (W41L, chain 1/2, )
24: VAR_038970 (E42D, chain 1/2, )
25: VAR_007558 (E42G, chain 1/2, )
26: VAR_038971 (F44S, chain 1/2, )
27: VAR_007559 (A45D, chain 1/2, )
28: VAR_038972 (A45S, chain 1/2, )
29: VAR_007560 (A45T, chain 1/2, )
30: VAR_007561 (G47A, chain 1/2, )
31: VAR_038973 (G47E, chain 1/2, )
32: VAR_007562 (G47R, chain 1/2, )
33: VAR_007563 (G47V, chain 1/2, )
34: VAR_007564 (T49A, chain 1/2, )
35: VAR_038974 (T49I, chain 1/2, )
36: VAR_007565 (S50I, chain 1/2, )
37: VAR_007566 (S50R, chain 1/2, )
38: VAR_007567 (S52P, chain 1/2, )
39: VAR_038975 (G53E, chain 1/2, )
40: VAR_007568 (E54G, chain 1/2, )
41: VAR_038976 (E54K, chain 1/2, )
42: VAR_007569 (L55P, chain 1/2, )
43: VAR_038977 (L55Q, chain 1/2, )
44: VAR_007570 (L58H, chain 1/2, )
45: VAR_007571 (L58R, chain 1/2, )
46: VAR_007572 (T59K, chain 1/2, )
47: VAR_007573 (T60A, chain 1/2, )
48: VAR_038978 (E61G, chain 1/2, )
49: VAR_007574 (E61K, chain 1/2, )
50: VAR_007575 (F64L, chain 1/2, )
51: VAR_007576 (I68L, chain 1/2, )
52: VAR_007577 (Y69H, chain 1/2, )
53: VAR_007578 (K70N, chain 1/2, )
54: VAR_007579 (V71A, chain 1/2, )
55: VAR_007580 (I73V, chain 1/2, )
56: VAR_007581 (D74H, chain 1/2, )
57: VAR_007582 (S77Y, chain 1/2, )
58: VAR_038979 (Y78F, chain 1/2, )
59: VAR_007583 (I84N, chain 1/2, )
60: VAR_007584 (I84S, chain 1/2, )
61: VAR_038980 (I84T, chain 1/2, )
62: VAR_010659 (E89K, chain 1/2, )
63: VAR_007585 (E89Q, chain 1/2, )
64: VAR_007586 (H90N, chain 1/2, )
65: VAR_007587 (A91S, chain 1/2, )
66: VAR_038981 (V94A, chain 1/2, )
67: VAR_007588 (A97G, chain 1/2, )
68: VAR_038982 (A97S, chain 1/2, )
69: VAR_007589 (G101S, chain 1/2, )
70: VAR_007590 (P102R, chain 1/2, )
71: VAR_007591 (R104C, chain 1/2, )
72: VAR_038983 (R104H, chain 1/2, )
73: VAR_038984 (T106N, chain 1/2, )
74: VAR_038985 (I107M, chain 1/2, )
75: VAR_007592 (I107V, chain 1/2, )
76: VAR_007593 (T109T, chain 1/2, )
77: VAR_007594 (L111M, chain 1/2, )
78: VAR_007595 (Y114C, chain 1/2, )
79: VAR_007598 (Y114H, chain 1/2, )
80: VAR_007596 (Y116S, chain 1/2, )
81: VAR_007597 (Y116V, chain 1/2, )
82: VAR_007599 (T119M, chain 1/2, )
83: VAR_038986 (A120S, chain 1/2, )
84: VAR_038987 (V122A, chain 1/2, )
85: VAR_007600 (V122I, chain 1/2, )
86: VAR_038988 (N124S, chain 1/2, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007547
C
30
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
C
10
R
02
UniProt
VAR_038959
L
32
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
L
12
P
03
UniProt
VAR_038960
M
33
I
TTHY_HUMAN
Polymorphism
---
1/2
M
13
I
04
UniProt
VAR_007548
D
38
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
D
18
E
05
UniProt
VAR_007549
D
38
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
D
18
G
06
UniProt
VAR_007550
V
40
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
V
20
I
07
UniProt
VAR_038961
S
43
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
S
23
N
08
UniProt
VAR_007551
P
44
S
TTHY_HUMAN
Disease (AMYL-TTR)
11541790
1/2
P
24
S
09
UniProt
VAR_010658
V
48
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
V
28
M
10
UniProt
VAR_007552
V
50
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
V
30
A
11
UniProt
VAR_038962
V
50
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
V
30
G
12
UniProt
VAR_007553
V
50
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
V
30
L
13
UniProt
VAR_007554
V
50
M
TTHY_HUMAN
Disease (AMYL-TTR)
28933979
1/2
V
30
M
14
UniProt
VAR_038963
F
53
C
TTHY_HUMAN
Unclassified
---
1/2
F
33
C
15
UniProt
VAR_007555
F
53
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
F
33
I
16
UniProt
VAR_007556
F
53
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
F
33
L
17
UniProt
VAR_038964
F
53
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
F
33
V
18
UniProt
VAR_038965
R
54
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
R
34
T
19
UniProt
VAR_038966
K
55
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
K
35
N
20
UniProt
VAR_007557
A
56
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
36
P
21
UniProt
VAR_038967
D
58
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
D
38
A
22
UniProt
VAR_038968
D
58
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
D
38
V
23
UniProt
VAR_038969
W
61
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
W
41
L
24
UniProt
VAR_038970
E
62
D
TTHY_HUMAN
Disease (AMYL-TTR)
11541796
1/2
E
42
D
25
UniProt
VAR_007558
E
62
G
TTHY_HUMAN
Disease (AMYL-TTR)
11541796
1/2
E
42
G
26
UniProt
VAR_038971
F
64
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
F
44
S
27
UniProt
VAR_007559
A
65
D
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
45
D
28
UniProt
VAR_038972
A
65
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
45
S
29
UniProt
VAR_007560
A
65
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
45
T
30
UniProt
VAR_007561
G
67
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
G
47
A
31
UniProt
VAR_038973
G
67
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
G
47
E
32
UniProt
VAR_007562
G
67
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
G
47
R
33
UniProt
VAR_007563
G
67
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
G
47
V
34
UniProt
VAR_007564
T
69
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
T
49
A
35
UniProt
VAR_038974
T
69
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
T
49
I
36
UniProt
VAR_007565
S
70
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
S
50
I
37
UniProt
VAR_007566
S
70
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
S
50
R
38
UniProt
VAR_007567
S
72
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
S
52
P
39
UniProt
VAR_038975
G
73
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
G
53
E
40
UniProt
VAR_007568
E
74
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
E
54
G
41
UniProt
VAR_038976
E
74
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
E
54
K
42
UniProt
VAR_007569
L
75
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
L
55
P
43
UniProt
VAR_038977
L
75
Q
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
L
55
Q
44
UniProt
VAR_007570
L
78
H
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
L
58
H
45
UniProt
VAR_007571
L
78
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
L
58
R
46
UniProt
VAR_007572
T
79
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
T
59
K
47
UniProt
VAR_007573
T
80
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
T
60
A
48
UniProt
VAR_038978
E
81
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
E
61
G
49
UniProt
VAR_007574
E
81
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
E
61
K
50
UniProt
VAR_007575
F
84
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
F
64
L
51
UniProt
VAR_007576
I
88
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
I
68
L
52
UniProt
VAR_007577
Y
89
H
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
Y
69
H
53
UniProt
VAR_007578
K
90
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
K
70
N
54
UniProt
VAR_007579
V
91
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
V
71
A
55
UniProt
VAR_007580
I
93
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
I
73
V
56
UniProt
VAR_007581
D
94
H
TTHY_HUMAN
Polymorphism
---
1/2
D
74
H
57
UniProt
VAR_007582
S
97
Y
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
S
77
Y
58
UniProt
VAR_038979
Y
98
F
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
Y
78
F
59
UniProt
VAR_007583
I
104
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
I
84
N
60
UniProt
VAR_007584
I
104
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
I
84
S
61
UniProt
VAR_038980
I
104
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
I
84
T
62
UniProt
VAR_010659
E
109
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
E
89
K
63
UniProt
VAR_007585
E
109
Q
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
E
89
Q
64
UniProt
VAR_007586
H
110
N
TTHY_HUMAN
Polymorphism
---
1/2
H
90
N
65
UniProt
VAR_007587
A
111
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
91
S
66
UniProt
VAR_038981
V
114
A
TTHY_HUMAN
Unclassified
---
1/2
V
94
A
67
UniProt
VAR_007588
A
117
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
97
G
68
UniProt
VAR_038982
A
117
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
97
S
69
UniProt
VAR_007589
G
121
S
TTHY_HUMAN
Polymorphism
---
1/2
G
101
S
70
UniProt
VAR_007590
P
122
R
TTHY_HUMAN
Polymorphism
---
1/2
P
102
R
71
UniProt
VAR_007591
R
124
C
TTHY_HUMAN
Polymorphism
---
1/2
R
104
C
72
UniProt
VAR_038983
R
124
H
TTHY_HUMAN
Polymorphism
121918095
1/2
R
104
H
73
UniProt
VAR_038984
T
126
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
T
106
N
74
UniProt
VAR_038985
I
127
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
I
107
M
75
UniProt
VAR_007592
I
127
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
I
107
V
76
UniProt
VAR_007593
A
129
T
TTHY_HUMAN
Disease (DTTRH)
---
1/2
T
109
T
77
UniProt
VAR_007594
L
131
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
L
111
M
78
UniProt
VAR_007595
Y
134
C
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
Y
114
C
79
UniProt
VAR_007598
Y
134
H
TTHY_HUMAN
Disease (CTS1)
---
1/2
Y
114
H
80
UniProt
VAR_007596
Y
136
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
Y
116
S
81
UniProt
VAR_007597
Y
136
V
TTHY_HUMAN
Unclassified
---
1/2
Y
116
V
82
UniProt
VAR_007599
T
139
M
TTHY_HUMAN
Polymorphism
28933981
1/2
T
119
M
83
UniProt
VAR_038986
A
140
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
A
120
S
84
UniProt
VAR_038987
V
142
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
V
122
A
85
UniProt
VAR_007600
V
142
I
TTHY_HUMAN
Disease (AMYL-TTR)
28933980
1/2
V
122
I
86
UniProt
VAR_038988
N
144
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
1/2
N
124
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSTHYRETIN_1
PS00768
Transthyretin signature 1.
TTHY_HUMAN
35-50
2
1:15-30
2:15-30
2
TRANSTHYRETIN_2
PS00769
Transthyretin signature 2.
TTHY_HUMAN
125-137
2
1:105-117
2:105-117
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Exons
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SCOP Domains
(1, 2)
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1a: SCOP_d1etb1_ (1:)
1b: SCOP_d1etb2_ (2:)
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Class
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All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Transthyretin (synonym: prealbumin)
(211)
Family
:
Transthyretin (synonym: prealbumin)
(198)
Protein domain
:
Transthyretin (synonym: prealbumin)
(194)
Human (Homo sapiens) [TaxId: 9606]
(184)
1a
d1etb1_
1:
1b
d1etb2_
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CATH Domains
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1a: CATH_1etb200 (2:9-125)
1b: CATH_1etb100 (1:9-126)
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Class
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Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.180, no name defined]
(150)
Human (Homo sapiens)
(131)
1a
1etb200
2:9-125
1b
1etb100
1:9-126
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