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Getting 'Biological Unit' information from database.
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1ESL
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
INSIGHT INTO E-SELECTIN(SLASH)LIGAND INTERACTION FROM THE CRYSTAL STRUCTURE AND MUTAGENESIS OF THE LEC(SLASH)EGF DOMAINS
Authors
:
B. J. Graves, R. L. Crowther
Date
:
03 Jun 94 (Deposition) - 31 Aug 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Adhesion Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Graves, R. L. Crowther, C. Chandran, J. M. Rumberger, S. Li, K. S. Huang, D. H. Presky, P. C. Familletti, B. A. Wolitzky, D. K. Burns
Insight Into E-Selectin/Ligand Interaction From The Crystal Structure And Mutagenesis Of The Lec/Egf Domains.
Nature V. 367 532 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: S1 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:80 , ASN A:82 , ASN A:105 , ASP A:106 , HOH A:249 , HOH A:315
BINDING SITE FOR RESIDUE CA A 163
2
AC2
SOFTWARE
TYR A:3 , ASN A:4 , GLU A:33 , GLU A:36 , HOH A:229 , HOH A:302
BINDING SITE FOR RESIDUE CA A 164
3
AC3
SOFTWARE
GLN A:20 , TYR A:23 , HOH A:219 , HOH A:221 , HOH A:286 , HOH A:309 , HOH A:310
BINDING SITE FOR RESIDUE CA A 165
4
AC4
SOFTWARE
TRP A:1 , SER A:40 , ALA A:121 , ASN A:138 , ASN A:139 , HOH A:233
BINDING SITE FOR RESIDUE CL A 180
5
AC5
SOFTWARE
CYS A:127 , TYR A:140 , HOH A:274
BINDING SITE FOR RESIDUE CL A 181
6
S1
AUTHOR
GLU A:80 , ASN A:82 , ASN A:105 , ASP A:106 , HOH A:249 , HOH A:315
CALCIUM IONS LOCATED IN THIS SITE IS BELIEVED TO BE PART OF THE NATIVE STRUCTURE. THE OTHER TWO CALCIUM IONS PROBABLY ARE PRESENT ONLY AS A RESULT OF THE HIGH CALCIUM CONCENTRATION (0.2M) USED IN CRYSTALLIZATION
[
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]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014301 (M10I, chain A, )
2: VAR_011790 (C109W, chain A, )
3: VAR_004191 (S128R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014301
M
31
I
LYAM2_HUMAN
Polymorphism
3917408
A
M
10
I
2
UniProt
VAR_011790
C
130
W
LYAM2_HUMAN
Polymorphism
5360
A
C
109
W
3
UniProt
VAR_004191
S
149
R
LYAM2_HUMAN
Polymorphism
5361
A
S
128
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(5, 4)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_1 (A:90-117)
2: EGF_3 (A:118-154)
3: EGF_1 (A:142-153)
4: EGF_2 (A:142-153)
5: SUSHI (A:157-157|-|-|-|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
LYAM2_HUMAN
111-138
1
A:90-117
2
EGF_3
PS50026
EGF-like domain profile.
LYAM2_HUMAN
139-175
1
A:118-154
3
EGF_1
PS00022
EGF-like domain signature 1.
LYAM2_HUMAN
163-174
1
A:142-153
4
EGF_2
PS01186
EGF-like domain signature 2.
LYAM2_HUMAN
163-174
1
A:142-153
5
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
LYAM2_HUMAN
178-239
240-301
315-364
378-427
441-490
491-549
1
A:157-157
-
-
-
-
-
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.3a (A:1-120)
Exon 1.4a (A:120-156)
Exon 1.5 (A:156-157)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2a/1.3a
2: Boundary 1.3a/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000333360
1b
ENSE00001950222
chr1:
169703203-169703112
92
LYAM2_HUMAN
-
0
0
-
-
1.2a
ENST00000333360
2a
ENSE00001367867
chr1:
169702801-169702717
85
LYAM2_HUMAN
1-13
13
0
-
-
1.3a
ENST00000333360
3a
ENSE00000814463
chr1:
169702139-169701756
384
LYAM2_HUMAN
13-141
129
1
A:1-120
120
1.4a
ENST00000333360
4a
ENSE00000789645
chr1:
169701083-169700976
108
LYAM2_HUMAN
141-177
37
1
A:120-156
37
1.5
ENST00000333360
5
ENSE00000789644
chr1:
169699758-169699573
186
LYAM2_HUMAN
177-239
63
1
A:156-157
2
1.6
ENST00000333360
6
ENSE00000451012
chr1:
169698814-169698629
186
LYAM2_HUMAN
239-301
63
0
-
-
1.7
ENST00000333360
7
ENSE00000789642
chr1:
169698515-169698327
189
LYAM2_HUMAN
301-364
64
0
-
-
1.8
ENST00000333360
8
ENSE00000789641
chr1:
169697387-169697199
189
LYAM2_HUMAN
364-427
64
0
-
-
1.9
ENST00000333360
9
ENSE00000451027
chr1:
169697068-169696880
189
LYAM2_HUMAN
427-490
64
0
-
-
1.10
ENST00000333360
10
ENSE00000789639
chr1:
169696666-169696490
177
LYAM2_HUMAN
490-549
60
0
-
-
1.11
ENST00000333360
11
ENSE00000451043
chr1:
169695947-169695840
108
LYAM2_HUMAN
549-585
37
0
-
-
1.12
ENST00000333360
12
ENSE00000789637
chr1:
169695069-169695048
22
LYAM2_HUMAN
585-592
8
0
-
-
1.13
ENST00000333360
13
ENSE00000814464
chr1:
169694942-169694870
73
LYAM2_HUMAN
592-610
19
0
-
-
1.14a
ENST00000333360
14a
ENSE00000814465
chr1:
169693650-169691782
1869
LYAM2_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1esla1 (A:1-118)
2a: SCOP_d1esla2 (A:119-157)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
E-selectin, C-lectin domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1esla1
A:1-118
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
E-selectin, EGF-domain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1esla2
A:119-157
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1eslA00 (A:1-157)
View:
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Label:
Classes
(
)
(
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1eslA00
A:1-157
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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