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1EQN
Biol. Unit 1
Info
Asym.Unit (257 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (54 KB)
Biol.Unit 5 (53 KB)
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(1)
Title
:
E.COLI PRIMASE CATALYTIC CORE
Authors
:
M. Podobnik, P. Mcinerney, M. O'Donnell, J. Kuriyan
Date
:
05 Apr 00 (Deposition) - 30 Jun 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Toprim Domain, Rossmann Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Podobnik, P. Mcinerney, M. O'Donnell, J. Kuriyan
A Toprim Domain In The Crystal Structure Of The Catalytic Core Of Escherichia Coli Primase Confirms A Structural Link To Dna Topoisomerases.
J. Mol. Biol. V. 300 353 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 9)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TOPRIM (A:259-341)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TOPRIM
PS50880
Toprim domain profile.
DNAG_ECOLI
259-341
1
A:259-341
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1eqna_ (A:)
1b: SCOP_d1eqnb_ (B:)
1c: SCOP_d1eqnc_ (C:)
1d: SCOP_d1eqnd_ (D:)
1e: SCOP_d1eqne_ (E:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA primase core
(6)
Superfamily
:
DNA primase core
(6)
Family
:
DNA primase DnaG catalytic core
(4)
Protein domain
:
DNA primase DnaG catalytic core
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1eqna_
A:
1b
d1eqnb_
B:
1c
d1eqnc_
C:
1d
d1eqnd_
D:
1e
d1eqne_
E:
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CATH Domains
(3, 15)
Info
all CATH domains
1a: CATH_1eqnA02 (A:241-367)
1b: CATH_1eqnB02 (B:241-367)
1c: CATH_1eqnC02 (C:241-367)
1d: CATH_1eqnD02 (D:241-367)
1e: CATH_1eqnE02 (E:241-367)
2a: CATH_1eqnA01 (A:115-240)
2b: CATH_1eqnB01 (B:115-240)
2c: CATH_1eqnC01 (C:115-240)
2d: CATH_1eqnD01 (D:115-240)
2e: CATH_1eqnE01 (E:115-240)
3a: CATH_1eqnC03 (C:368-419)
3b: CATH_1eqnD03 (D:368-419)
3c: CATH_1eqnA03 (A:368-418)
3d: CATH_1eqnB03 (B:368-418)
3e: CATH_1eqnE03 (E:368-413)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Dna Topoisomerase Vi A Subunit; Chain: A, domain 2
(11)
Homologous Superfamily
:
[code=3.40.1360.10, no name defined]
(9)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1eqnA02
A:241-367
1b
1eqnB02
B:241-367
1c
1eqnC02
C:241-367
1d
1eqnD02
D:241-367
1e
1eqnE02
E:241-367
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
DNA primase DNAg catalytic core, N-terminal domain
(4)
Homologous Superfamily
:
[code=3.90.980.10, no name defined]
(4)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1eqnA01
A:115-240
2b
1eqnB01
B:115-240
2c
1eqnC01
C:115-240
2d
1eqnD01
D:115-240
2e
1eqnE01
E:115-240
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Pheromone ER-1
(6)
Homologous Superfamily
:
[code=1.20.50.20, no name defined]
(4)
Escherichia coli. Organism_taxid: 562.
(3)
3a
1eqnC03
C:368-419
3b
1eqnD03
D:368-419
3c
1eqnA03
A:368-418
3d
1eqnB03
B:368-418
3e
1eqnE03
E:368-413
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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Show PDB file:
Asym.Unit (257 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
Biol.Unit 3 (54 KB)
Header - Biol.Unit 3
Biol.Unit 4 (54 KB)
Header - Biol.Unit 4
Biol.Unit 5 (53 KB)
Header - Biol.Unit 5
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