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1EQ2
Biol. Unit 2
Info
Asym.Unit (525 KB)
Biol.Unit 1 (255 KB)
Biol.Unit 2 (268 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF ADP-L-GLYCERO-D-MANNOHEPTOSE 6-EPIMERASE
Authors
:
A. M. Deacon, Y. S. Ni, W. G. Coleman Jr. , S. E. Ealick
Date
:
31 Mar 00 (Deposition) - 08 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
N-Terminal Domain Rossmann Fold, C-Terminal Mixed Alpha/Beta Domain, Short-Chain Dehydrogenase/Reductase Fold, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Deacon, Y. S. Ni, W. G. Coleman Jr. , S. E. Ealick
The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-Epimerase: Catalysis With A Twist.
Structure Fold. Des. V. 8 453 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQa)
1b: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQb)
1c: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQc)
1d: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQd)
1e: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQe)
1f: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQf)
1g: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQg)
1h: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQh)
1i: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQi)
1j: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE (ADQj)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
2c: S-HYDROXYCYSTEINE (CSOc)
2d: S-HYDROXYCYSTEINE (CSOd)
2e: S-HYDROXYCYSTEINE (CSOe)
2f: S-HYDROXYCYSTEINE (CSOf)
2g: S-HYDROXYCYSTEINE (CSOg)
2h: S-HYDROXYCYSTEINE (CSOh)
2i: S-HYDROXYCYSTEINE (CSOi)
2j: S-HYDROXYCYSTEINE (CSOj)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
3d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
3f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
3g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
3h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
3i: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPi)
3j: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADQ
5
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE-GLUCOSE
2
CSO
5
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
NAP
5
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(10, 10)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
GLY F:6 , GLY F:9 , PHE F:10 , ILE F:11 , ASP F:31 , ASN F:32 , LYS F:38 , LYS F:53 , GLU F:75 , GLY F:76 , ALA F:77 , SER F:79 , ASN F:92 , TYR F:96 , ALA F:114 , SER F:115 , SER F:116 , TYR F:140 , LYS F:144 , TYR F:167 , PHE F:168 , VAL F:170 , HIS F:177 , LYS F:178 , HOH F:661 , HOH F:782 , HOH F:809 , ADQ F:2505
BINDING SITE FOR RESIDUE NAP F 2405
02
BC3
SOFTWARE
ALA F:117 , TYR F:167 , PHE F:168 , ASN F:169 , SER F:180 , ALA F:182 , HIS F:187 , LEU F:200 , PHE F:201 , SER F:204 , ARG F:209 , PHE F:243 , LEU F:268 , TYR F:272 , GLN F:273 , THR F:276 , HOH F:702 , HOH F:965 , HOH F:1071 , HOH F:1262 , NAP F:2405
BINDING SITE FOR RESIDUE ADQ F 2505
03
BC4
SOFTWARE
GLY G:6 , GLY G:9 , PHE G:10 , ILE G:11 , ASP G:31 , ASN G:32 , LYS G:38 , LYS G:53 , GLU G:75 , GLY G:76 , ALA G:77 , SER G:79 , ASN G:92 , TYR G:96 , ALA G:114 , SER G:115 , SER G:116 , TYR G:140 , LYS G:144 , TYR G:167 , PHE G:168 , VAL G:170 , HIS G:177 , LYS G:178 , HOH G:620 , HOH G:819
BINDING SITE FOR RESIDUE NAP G 2406
04
BC5
SOFTWARE
THR G:81 , ASN G:169 , SER G:180 , MET G:181 , ALA G:182 , VAL G:184 , HIS G:187 , PHE G:201 , SER G:204 , ARG G:209 , PHE G:243 , TYR G:272 , HOH G:799 , HOH G:1338 , HOH G:1546
BINDING SITE FOR RESIDUE ADQ G 2506
05
BC6
SOFTWARE
GLY H:6 , GLY H:9 , PHE H:10 , ILE H:11 , ASP H:31 , ASN H:32 , LYS H:38 , LYS H:53 , GLU H:75 , GLY H:76 , ALA H:77 , SER H:79 , TYR H:88 , ASN H:92 , TYR H:96 , ALA H:114 , SER H:115 , SER H:116 , TYR H:140 , LYS H:144 , TYR H:167 , PHE H:168 , VAL H:170 , HIS H:177 , LYS H:178 , HOH H:615
BINDING SITE FOR RESIDUE NAP H 2407
06
BC7
SOFTWARE
ASN H:169 , SER H:180 , VAL H:184 , HIS H:187 , LEU H:200 , PHE H:201 , SER H:204 , ARG H:209 , PHE H:243 , TYR H:272 , HOH H:1218 , HOH H:1650
BINDING SITE FOR RESIDUE ADQ H 2507
07
BC8
SOFTWARE
GLY I:6 , GLY I:9 , PHE I:10 , ILE I:11 , ASP I:31 , ASN I:32 , LYS I:38 , LYS I:53 , GLU I:75 , GLY I:76 , ALA I:77 , SER I:79 , ASN I:92 , TYR I:96 , ALA I:114 , SER I:115 , SER I:116 , TYR I:140 , LYS I:144 , TYR I:167 , PHE I:168 , VAL I:170 , HIS I:177 , LYS I:178 , HOH I:624 , HOH I:633 , HOH I:928 , HOH I:947
BINDING SITE FOR RESIDUE NAP I 2408
08
BC9
SOFTWARE
THR I:81 , ASN I:169 , SER I:180 , MET I:181 , ALA I:182 , VAL I:184 , HIS I:187 , PHE I:201 , SER I:204 , ARG I:209 , PHE I:243 , LEU I:268 , TYR I:272 , HOH I:742 , HOH I:1164 , HOH I:1401 , HOH I:1561
BINDING SITE FOR RESIDUE ADQ I 2508
09
CC1
SOFTWARE
GLY J:6 , GLY J:9 , PHE J:10 , ILE J:11 , ASP J:31 , ASN J:32 , LYS J:38 , LYS J:53 , GLU J:75 , GLY J:76 , ALA J:77 , SER J:79 , ASN J:92 , TYR J:96 , ALA J:114 , SER J:115 , SER J:116 , TYR J:140 , LYS J:144 , TYR J:167 , PHE J:168 , VAL J:170 , HIS J:177 , LYS J:178 , HOH J:602
BINDING SITE FOR RESIDUE NAP J 2409
10
CC2
SOFTWARE
ASN J:169 , SER J:180 , ALA J:182 , VAL J:184 , HIS J:187 , LEU J:200 , PHE J:201 , SER J:204 , ARG J:209 , PHE J:243 , TYR J:272 , HOH J:1602
BINDING SITE FOR RESIDUE ADQ J 2509
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1eq2a_ (A:)
1b: SCOP_d1eq2b_ (B:)
1c: SCOP_d1eq2c_ (C:)
1d: SCOP_d1eq2d_ (D:)
1e: SCOP_d1eq2e_ (E:)
1f: SCOP_d1eq2f_ (F:)
1g: SCOP_d1eq2g_ (G:)
1h: SCOP_d1eq2h_ (H:)
1i: SCOP_d1eq2i_ (I:)
1j: SCOP_d1eq2j_ (J:)
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Classes
(
)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
ADP-L-glycero-D-mannoheptose 6-epimerase
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1eq2a_
A:
1b
d1eq2b_
B:
1c
d1eq2c_
C:
1d
d1eq2d_
D:
1e
d1eq2e_
E:
1f
d1eq2f_
F:
1g
d1eq2g_
G:
1h
d1eq2h_
H:
1i
d1eq2i_
I:
1j
d1eq2j_
J:
[
close SCOP info
]
CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_1eq2A01 (A:1-167,A:214-236,A:280-292)
1b: CATH_1eq2B01 (B:1-167,B:214-236,B:280-292)
1c: CATH_1eq2C01 (C:1-167,C:214-236,C:280-292)
1d: CATH_1eq2D01 (D:1-167,D:214-236,D:280-292)
1e: CATH_1eq2E01 (E:1-167,E:214-236,E:280-292)
1f: CATH_1eq2F01 (F:1-167,F:214-236,F:280-292)
1g: CATH_1eq2G01 (G:1-167,G:214-236,G:280-292)
1h: CATH_1eq2H01 (H:1-167,H:214-236,H:280-292)
1i: CATH_1eq2I01 (I:1-167,I:214-236,I:280-292)
1j: CATH_1eq2J01 (J:1-167,J:214-236,J:280-292)
2a: CATH_1eq2D02 (D:168-213,D:237-279,D:293-304)
2b: CATH_1eq2F02 (F:168-213,F:237-279,F:293-304)
2c: CATH_1eq2G02 (G:168-213,G:237-279,G:293-304)
2d: CATH_1eq2I02 (I:168-213,I:237-279,I:293-304)
2e: CATH_1eq2B02 (B:168-213,B:237-279,B:293-304)
2f: CATH_1eq2E02 (E:168-213,E:237-279,E:293-304)
2g: CATH_1eq2J02 (J:168-213,J:237-279,J:293-304)
2h: CATH_1eq2H02 (H:168-213,H:237-279,H:293-304)
2i: CATH_1eq2A02 (A:168-213,A:237-279,A:293-307)
2j: CATH_1eq2C02 (C:168-213,C:237-279,C:293-304)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562.
(49)
1a
1eq2A01
A:1-167,A:214-236,A:280-292
1b
1eq2B01
B:1-167,B:214-236,B:280-292
1c
1eq2C01
C:1-167,C:214-236,C:280-292
1d
1eq2D01
D:1-167,D:214-236,D:280-292
1e
1eq2E01
E:1-167,E:214-236,E:280-292
1f
1eq2F01
F:1-167,F:214-236,F:280-292
1g
1eq2G01
G:1-167,G:214-236,G:280-292
1h
1eq2H01
H:1-167,H:214-236,H:280-292
1i
1eq2I01
I:1-167,I:214-236,I:280-292
1j
1eq2J01
J:1-167,J:214-236,J:280-292
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
UDP-galactose 4-epimerase; domain 1
(99)
Homologous Superfamily
:
UDP-galactose 4-epimerase, domain 1
(99)
Escherichia coli. Organism_taxid: 562.
(15)
2a
1eq2D02
D:168-213,D:237-279,D:293-304
2b
1eq2F02
F:168-213,F:237-279,F:293-304
2c
1eq2G02
G:168-213,G:237-279,G:293-304
2d
1eq2I02
I:168-213,I:237-279,I:293-304
2e
1eq2B02
B:168-213,B:237-279,B:293-304
2f
1eq2E02
E:168-213,E:237-279,E:293-304
2g
1eq2J02
J:168-213,J:237-279,J:293-304
2h
1eq2H02
H:168-213,H:237-279,H:293-304
2i
1eq2A02
A:168-213,A:237-279,A:293-307
2j
1eq2C02
C:168-213,C:237-279,C:293-304
[
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]
Pfam Domains
(0, 0)
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